Detailed information on CNT30367474


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697157Sorghum bicolorOryza sativa38.7349.5593.64110forward
CNT30520761Sorghum bicolorSetaria italica39.4443.4197.32112forward
CNT30295130Sorghum bicolorTriticum aestivum38.389.7888.99109reverse complement
CNT30224773Sorghum bicolorHordeum vulgare39.4445.7194.64112forward
CNT30395728Sorghum bicolorTriticum turgidum65.1441.2992.97185forward
CNT30568742Sorghum bicolorActinidia chinensis56.3474.0786.25160forward
CNT30552909Sorghum bicolorOryza glaberrima36.9738.1892.38105forward
CNT30625786Sorghum bicolorDaucus carota30.9910.390.9188forward
CNT30685689Sorghum bicolorTriticum urartu34.1537.696.9197forward
CNT30479018Sorghum bicolorArabidopsis halleri42.9637.7783.61122forward
CNT30369767Sorghum bicolorOryza glumipatula47.5452.5393.33135forward
CNT30578215Sorghum bicolorOryza barthii39.7915.7892.92113forward

Expression of CNT30367474

Peptides detected in this lncRNA

>peptide 1 (93 aa)
KTVLMGFMATWFLAASPMRRSESVKATYEGVVRFPWSLAMISTRSCRGRCRSPARLPCRPSLLALSGLRSRGGREGIGGGGGLGEGAGGTRVSR

>peptide 2 (84 aa)
KDGVDGVHGDLVLGRISDEALGVGEGDVRGRGAVPLVVGDDLDTVVPRSMPIAGPSPLPAISSRSQRFAVSRRTGGDWRRRRLG*

Sequence

>CNT30367474
AAAGACGGTGTTGATGGGGTTCATGGCGACCTGGTTCTTGGCCGCATCTCCGATGAGGCGCTCGGAGTCGGTGAAGGCGACGTACGAGGGCGTGGTGCGG
TTCCCCTGGTCGTTGGCGATGATCTCGACACGGTCGTGCCGAGGTCGATGCCGATCGCCGGCCCGTCTCCCTTGCCGGCCATCTCTTCTCGCTCTCAGCG
GTTTGCGGTCTCGCGGAGGACGGGAGGGGATTGGCGGCGGCGGCGGCTTGGGTGAGGGAGCAGGGGGGACTAGGGTTTCGAGAG