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Detailed information on CNT30466309


BLAST search results

BLAST vs Swiss-Prot:
sp|A2X7F7|PAL2_ORYSI, E-value = 2e-142

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691552Saccharum spontaneumOryza sativa45.8236.3489.62318forward
CNT30640936Saccharum spontaneumNymphaea colorata19.8827.9488.41138forward
CNT30533290Saccharum spontaneumEucalyptus grandis79.8346.3286.28554forward
CNT30317648Saccharum spontaneumCorylus avellana28.3933.9779.19197forward
CNT30162464Saccharum spontaneumPistacia vera26.5134.3979.35184forward
CNT30286106Saccharum spontaneumTriticum aestivum15.4235.4384.11107forward
CNT30225299Saccharum spontaneumHordeum vulgare24.6450.5987.72171forward
CNT30553532Saccharum spontaneumOryza glaberrima39.0535.788.93271forward
CNT30435636Saccharum spontaneumAegilops tauschii39.1939.4285.29272forward
CNT30244105Saccharum spontaneumAvena sativa76.6632.3487.78532forward
CNT3075415Saccharum spontaneumBrassica juncea21.916.1588.16152forward
CNT30135526Saccharum spontaneumLolium perenne67.4454.886.32468forward
CNT30573527Saccharum spontaneumVitis vinifera46.6921.2280.56324forward
CNT3024838Saccharum spontaneumPopulus trichocarpa31.8417.9780.54221forward
CNT30149709Saccharum spontaneumBrachypodium distachyon21.184993.2147forward
CNT30100429Saccharum spontaneumOryza rufipogon69.3135.4790.85481forward
CNT30576230Saccharum spontaneumOryza barthii19.651.1387.5136forward
CNT3040161Saccharum spontaneumMarchantia polymorpha59.5128.781.36413forward

Expression of CNT30466309

Peptides detected in this lncRNA

>peptide 1 (45 aa)
AAGVVVVPVHRLAVDGREQGLLTEARAVKVAVQARGQHLPGHRHH*

>peptide 2 (46 aa)
MSFSTSTASAVFLDEMRPRELTSWLCCSALWTWLVTGLARNWSSEQ*

>peptide 3 (60 aa)
MSLPIAAMASLVLSMDTPMGVPWKLPPWRALPRETSMSGLSLTELISRSIDLVAARMTSI*

Sequence

>CNT30466309
GCGCTGCAGGGGTCGTCGTAGTACCCGTACACCGCCTCGCGGTCGATGGCCGTGAGCAGGGCCTTCTCACTGAAGCGCGCGCTGTGAAGGTCGCCGTCCA
GGCTCGTGGTCAGCACCTTCCGGGCCACCGCCATCACTGAGTTCTTGACGGCGCTCTTCAGGTTCTCCTCGAGGTGGCGCAGGTCGACGGCCTGGCACAG
CGCGATCAGGAACGTCGACGACATGAGCTTCAGCACGTCGACGGCCTCGGCGGTCTTCCTGGACGAGATGAGGCCGAGGGAGTTGACGTCCTGGTTGTGC
TGCTCCGCGCTCTGGACGTGGTTGGTCACGGGGTTGGCCAGGAACTGGAGCTCAGAGCAGTAGGAGGCCATGGCGATCTCGGCGCCCTTGAAGCCGTAGT
CCAGGCTCGGGTTGCGCCCTCCGGACAGGTTGGACGGCAGGCCGTTGTTGTAGAAGTCGTTCACCAGCTCCGAGAACTGCGCGAACATGAGCTTGCCGAT
CGCCGCGATGGCAAGCCTGGTGTTGTCCATGGACACGCCGATGGGCGTGCCCTGGAAGTTGCCGCCGTGGAGAGCCTTGCCACGGGAGACGTCAATGAGC
GGATTGTCGTTGACGGAGTTGATCTCGCGCTCGATCGACTTGGTGGCGGCGCGGATGACCTCGATCTGAGGGCCCAGCCACTGCGGCGACGTGC