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Detailed information on CNT30573527


BLAST search results

BLAST vs Swiss-Prot:
sp|P45730|PALY_POPTR, E-value = 0.0

BLAST vs NONCODE:
NONVVIT002503, E-value = 2e-104

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691552Vitis viniferaOryza sativa16.3128.4680.72249forward
CNT30533290Vitis viniferaEucalyptus grandis32.3541.380.77494forward
CNT30317648Vitis viniferaCorylus avellana3797.4179.47565forward
CNT30517474Vitis viniferaJuglans regia15.323985.47234forward
CNT30727763Vitis viniferaCorchorus capsularis26.9251.3179.08411forward
CNT3069045Vitis viniferaQuercus suber27.8397.786.12425forward
CNT30628619Vitis viniferaVigna unguiculata58.0997.2681.62887forward
CNT30196554Vitis viniferaPisum sativum24.6980.3879.31377forward
CNT30710196Vitis viniferaGlycine max10.8123.1784.24165forward
CNT30162471Vitis viniferaPistacia vera54.2299.6483.21828forward
CNT30636617Vitis viniferaCapsicum annuum74.8587.7979.881143forward
CNT3092362Vitis viniferaSolanum tuberosum64.4451.8481.91984forward
CNT30225885Vitis viniferaHordeum vulgare5.0423.5587.0177forward
CNT30562324Vitis viniferaActinidia chinensis6.4246.6789.898forward
CNT30510944Vitis viniferaSolanum lycopersicum31.7698.1882.27485forward
CNT30144087Vitis viniferaMedicago truncatula19.3888.181.08296forward
CNT30435636Vitis viniferaAegilops tauschii10.4123.0485.53159forward
CNT30244105Vitis viniferaAvena sativa29.0826.9980.41444forward
CNT30466309Vitis viniferaSaccharum spontaneum21.2246.6980.56324forward
CNT30135526Vitis viniferaLolium perenne22.9240.9881.71350forward
CNT30620237Vitis viniferaCajanus cajan17.0930.3580.46261forward
CNT30358787Vitis viniferaLactuca sativa17.6872.5880270forward
CNT3024809Vitis viniferaPopulus trichocarpa52.5977.7380.95803forward
CNT30321826Vitis viniferaAsparagus officinalis5.2420.5186.2580forward
CNT3038180Vitis viniferaCucumis melo2230.683.63336forward
CNT30329128Vitis viniferaDioscorea rotundata51.6731.0479.59789forward
CNT30149709Vitis viniferaBrachypodium distachyon9.634982.99147forward
CNT30101950Vitis viniferaOryza rufipogon19.9166.6782.24304forward
CNT30592821Vitis viniferaEragrostis curvula4.4531.7886.7668forward
CNT30113881Vitis viniferaFicus carica36.4851.8678.82557forward
CNT3040161Vitis viniferaMarchantia polymorpha23.925.3678.36365forward

Expression of CNT30573527

Peptides detected in this lncRNA

>peptide 1 (29 aa)
TLHRTSCALNLFGQNGLQLLLECHYFLED*

>peptide 2 (58 aa)
MAWQSATRYVVDMSFKISTASAVFLEEIKPKEFTSWLCCSALWTWLVTGLAKNWSSEQ*

>peptide 3 (61 aa)
MAAMAKRVLSMETPIGVPWKLPPCRALFLETSIKGLSFTELISRSMDLVDARMTSMCGPSH*

>peptide 4 (99 aa)
HSPPHLLRSQPLWAKRPSTPPRMPLFFGRLRYFHSSHFRHCSAHVPPELALTSASVDMWRCRGHRCRRIHVPYPPLLASPSRRISMDGVLHWLQWLESS*

>peptide 5 (66 aa)
PLSTAPLALSTSLGKTAFNSSSNATIFWKIEVLPFFSFSPLLSACSTRTCLNFCISGYVALQGSSM*

Sequence

>CNT30573527
CCACTCTCCACCGCACCTCTTGCGCTCTCAACCTCTTTGGGCAAAACGGCCTTCAACTCCTCCTCGAATGCCACTATTTTTTGGAAGATTGAGGTACTTC
CATTCTTCTCATTTTCGCCATTGCTCAGCGCATGTTCCACCAGAACTTGCCTTAACTTCTGCATCAGTGGATATGTGGCGCTGCAGGGGTCATCGATGTA
GGCGAATACATGTTCCCTATCCACCACTTTTAGCAAGTCCTTCTCGCAGAATCTCGATGGATGGAGTCCTCCATTGGCTCCAGTGGTTAGAGTCTTCTTA
GCTACGTGGCTTACAGTCTTCTTCACAGTGCTCTTCAAATTCTCCTCCAAATGCCTCAAATCAATGGCCTGGCAGAGTGCCACTAGGTATGTGGTAGACA
TGAGCTTCAAGATATCCACCGCTTCAGCTGTTTTCCTGGAGGAGATTAAGCCCAAGGAGTTCACATCTTGGTTGTGTTGCTCAGCACTTTGGACATGGTT
GGTAACAGGATTGGCCAAGAACTGGAGCTCTGAACAGTAGGAAGCCATGGCAATTTCTGCTCCCTTGAAACCATAATCCAGACTCGGGTTCCGGCTTCCA
GAGAGATTTGATGGCAGTCCATTGTTGTAGAAGTCATTGACAAGCTCTGAGAACTGGGCAAACATAAGCTTCCCAATGGCTGCAATGGCCAAGCGGGTGT
TGTCCATGGAGACTCCAATTGGGGTCCCCTGGAAGTTGCCACCATGTAGAGCCTTGTTCCTGGAAACATCGATCAAGGGGTTATCATTCACAGAGTTGAT
CTCCCGTTCGATGGATTTAGTTGATGCTCGGATGACTTCAATGTGTGGGCCAAGCCATTGAGGTGAAGTCCTGAGAGCATATCGATCTTGCTTCGGCTTC
TGCAGAGGATCCATCTCATGTAGCTTCTTAGCTTCTTTCACATAAGAGCTTCCATCTAGAATGTGCTCCATAATGGCTGCAGCCTCGATTTGGCCAGGGT
GGTGCTTCAATTTGTGAGTCAAGTGGTCAGTGAATTCGGGCTTCCCCTGCATCACTTCAGCAAAAATAGCAGATAAAACTTCAGACAAAACTGCCAGCAC
ATTGGTCTCAAAAAGCACCATAGAGGCCAAGCCAGAGCCAACTGCAGTGCCATTAACAAGAGCCAGGCCTTCCTTAGGTTGCAACTCAAAAAATCCCGAC
TCGATCCCAGCCATTTTAAAGGCCTCTTCGGCATTGACAACTTCACCGGAAGGTCCGACAGCTTTGGAATTAGGCCTGCCAATGAGAAGACCAGCGATGT
AGGAGAGAGGAACCAGGTCTCCGGAGGCAGTGACGGTGCCACGCAGAGGCAAGCATGGAGTGATGTTGTGATTGAGGAGCTTGGTGATTGCTTCCAGAAT
CTCAAATCTGATGCCGGAGTAGCCTTGGAGGAGGGTGTTGATCCTCACGAGCATGGCGGCTCTTGTTGCTGAGTGAGGCAGTGTGTGGCATGACTCTCTT
CCGTTCCCAAATATCCCAGCATTCAAG