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Detailed information on CNT3040161


BLAST search results

BLAST vs Swiss-Prot:
sp|P52777|PALY_PINTA, E-value = 0.0

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691552Marchantia polymorphaOryza sativa16.6127.3183.26239forward
CNT30640936Marchantia polymorphaNymphaea colorata7.4421.6685.98107forward
CNT30533290Marchantia polymorphaEucalyptus grandis33.740.5580.21485forward
CNT30189069Marchantia polymorphaSecale cereale7.3724.5485.85106forward
CNT30225274Marchantia polymorphaHordeum vulgare7.5743.9586.24109forward
CNT30144087Marchantia polymorphaMedicago truncatula7.9934.2383.48115forward
CNT30244654Marchantia polymorphaAvena sativa43.4328.3780625forward
CNT30466309Marchantia polymorphaSaccharum spontaneum28.759.5181.36413forward
CNT30135526Marchantia polymorphaLolium perenne25.1642.3980.94362forward
CNT30345244Marchantia polymorphaEragrostis tef6.1835.7485.3989forward
CNT30573527Marchantia polymorphaVitis vinifera25.3623.978.36365forward
CNT30107267Marchantia polymorphaOryza longistaminata7.1641.8783.5103forward
CNT30100429Marchantia polymorphaOryza rufipogon24.9526.4783.57359forward
CNT30592821Marchantia polymorphaEragrostis curvula9.161.2182.44131forward

Expression of CNT3040161

Peptides detected in this lncRNA

>peptide 1 (52 aa)
MDHRIPEYPCSRVLVLTSIAARVVEAGRMLEASLPRTPALRKRINSLCKSTP*

>peptide 2 (31 aa)
VGCAGCIVDVGEWRLVVNHFEEILLTEPRWQ*

>peptide 3 (93 aa)
MSLPMAAMASRMLSMDTPMGVPWKFPPCTAMSRDTSMSGLSLTELISLSMECVAARITSIWGPSHWGDVLRAYLSCLGFWSGSVSWSLAAAFM*

>peptide 4 (59 aa)
MEAKAEPTAVPFTSASPSLGCSSNGFSNPTSFKASCAVTTSPHSVTALELGRPVSRPAM*

>peptide 5 (58 aa)
MSLKISIASSVLRAEMRPKEFTSWLCCSALCTWVVTGLAKYKSSEVYDAMAISAPLNP*

>peptide 6 (57 aa)
MLHDGSGFNLSGVMLELVGEVVGELGLALHHLTEQSRRHFGEEREHVGIVATYGSQG*

Sequence

>CNT3040161
GTAGGATGCGCTGGTTGCATCGTCGATGTAGGAGAATGGAGGCTGGTTGTCAACCACTTTGAGGAGATCCTTCTCACAGAACCGCGATGGCAGTAGGCAG
CCTTGGGCATCGGTGAAGAGAGTCTTCTTCGCCGCTTGAGAGACAACATTCTGGACACTCACTTGCATGTTCTCCTCCAGGTGCCGCAGATCCACAGCCT
GGCACAACGCCACCAAATAGGTGGAGCACATGAGCTTGAAGATCTCGATAGCTTCCTCTGTTTTACGAGCTGAGATGAGACCCAAAGAGTTCACGTCCTG
GTTGTGTTGCTCTGCACTCTGCACGTGGGTGGTCACTGGGTTGGCCAAGTACAAGAGCTCCGAGGTGTACGATGCCATGGCTATCTCCGCTCCTTTGAAT
CCATAGTCCAAGCTCGGGTTGGGACCTCCCGTCAGATTCGATGGAAGCCCGCCGTTATAGAAGTCGTTGACGAGCTCCGACATCTGAGCGAACATGAGCT
TGCCCATGGCTGCAATGGCCAGTCGCATGTTGTCCATGGACACTCCGATGGGAGTGCCCTGGAAGTTTCCACCGTGCACTGCCATGTCTCGGGACACATC
GATGAGCGGGTTGTCGTTGACAGAGTTGATCTCCCTCTCGATGGAGTGTGTGGCTGCACGGATCACCTCGATTTGGGGGCCCAGCCACTGGGGAGACGTC
CTCAGAGCGTACCTGTCCTGCTTGGGTTTCTGGAGCGGGTCCGTTTCGTGGAGCTTGGCTGCGGCCTTCATGTAGGAGCTGCCCTCTAGCACATGCTCCA
TGATGGCAGCGGCTTCAATCTGTCCGGGGTGATGCTTGAGCTTGTGGGTGAGGTGGTCGGTGAACTCGGGCTTGCCCTGCATCACCTCACAGAACAGAGC
CGACGACACTTCGGCGAAGAGCGCGAGCACGTTGGCATCGTAGCAACATATGGAAGCCAAGGCTGAGCCGACTGCTGTACCATTCACAAGTGCGAGTCCC
TCTTTGGGCTGCAGCTCGAATGGCTTCAGCAATCCGACGAGCTTCAAAGCTTCGTGCGCAGTCACAACATCTCCGCATTCTGTGACGGCTTTGGAGTTGG
GACGGCCGGTAAGCAGACCTGCAATGTAGGAAAGGGGAACGAGATCTCCTGAAGCTGTGATGGTGCCCCGAAGAGGAAGTTGAGGAGTGATCTGCTTGTT
GAGAAATTTCTGCAGAGTTTGGAGGATGGACCACCGAATTCCGGAATACCCTTGCAGCAGAGTGTTGGTTCTCACCAGCATTGCTGCTCGGGTCGTGGAG
GCCGGAAGGATGTTGGAAGCATCTTTGCCGAGAACTCCAGCGTTGAGAAAACGAATCAACTCTCTCTGTAAGTCGACCCCCTGATCAGTGCGGCGGTGGG
AGGTGGCACCGAAGCCTGTAGTGACACCGTAAGTGTCAG