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Detailed information on CNT30225299


BLAST search results

BLAST vs Swiss-Prot:
sp|P45733|PAL3_TOBAC, E-value = 1e-42

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691552Hordeum vulgareOryza sativa47.9318.5192.59162forward
CNT30640936Hordeum vulgareNymphaea colorata23.3715.9984.8179forward
CNT30533290Hordeum vulgareEucalyptus grandis47.6313.4688.2161forward
CNT30162464Hordeum vulgarePistacia vera48.8230.8481.82165forward
CNT3096043Hordeum vulgareSolanum tuberosum43.4914.7180.95147forward
CNT30510882Hordeum vulgareSolanum lycopersicum47.3441.6780160forward
CNT30553532Hordeum vulgareOryza glaberrima49.412286.83167forward
CNT30435636Hordeum vulgareAegilops tauschii47.0423.0487.42159forward
CNT30466309Hordeum vulgareSaccharum spontaneum50.5924.6487.72171forward
CNT30139541Hordeum vulgareLolium perenne48.8216.3593.33165forward

Expression of CNT30225299

Peptides detected in this lncRNA

>peptide 1 (54 aa)
MAWHSATMYVEDMSFRMSTASAVFLAETRPREFTSWLCCSALWTWLVTGLARYWS

>peptide 2 (70 aa)
HQWVVGAACVVGVAEHGLAVDGGDEALLAEARAGEVAGRVHGQHLLRHLRHAVLHGGRWPGTAPPCMWRT*

>peptide 3 (91 aa)
MAVMRLFSLKRALERSPVGFMVSTFFDTCVTQFFTEVDGLAQRHHVCGGHELQDVHSLGGLPGRDEAERVHVLVVLLRTLDMVGHRVGKVLE

Sequence

>CNT30225299
CATCAGTGGGTAGTTGGCGCTGCATGCGTCGTCGGCGTAGCTGAACACGGCCTCGCGGTCGATGGCGGTGATGAGGCTCTTCTCGCTGAAGCGCGCGCTG
GAGAGGTCGCCGGTAGGGTTCATGGTCAGCACCTTCTTCGACACCTGCGTCACGCAGTTCTTCACGGAGGTCGATGGCCTGGCACAGCGCCACCATGTAT
GTGGAGGACATGAGCTTCAGGATGTCCACAGCCTCGGCGGTCTTCCTGGCCGAGACGAGGCCGAGAGAGTTCACGTCCTGGTTGTGCTGCTCCGCACTCT
GGACATGGTTGGTCACCGGGTTGGCAAGGTACTGGAGC