Detailed information on CNT3075415


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SS45|PAL4_ARATH, E-value = 1e-72

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30640936Brassica junceaNymphaea colorata13.625.9185.94128forward
CNT30636696Brassica junceaCapsicum annuum29.3322.0180.07276forward
CNT3096379Brassica junceaSolanum tuberosum12.0127.3684.96113forward
CNT30510944Brassica junceaSolanum lycopersicum11.5822.0684.4109forward
CNT30435636Brassica junceaAegilops tauschii16.1522.0384.21152forward
CNT30242898Brassica junceaAvena sativa26.2516.6381.78247forward
CNT30466309Brassica junceaSaccharum spontaneum16.1521.988.16152forward
CNT3024809Brassica junceaPopulus trichocarpa28.4825.9478.73268forward
CNT3038180Brassica junceaCucumis melo26.0422.3178.78245forward
CNT30149709Brassica junceaBrachypodium distachyon14.2444.6787.31134forward
CNT30101950Brassica junceaOryza rufipogon16.4733.9987.1155forward

Expression of CNT3075415

Peptides detected in this lncRNA

>peptide 1 (43 aa)
MLLGALDVVGHGVSQELELRAVRSHGDLRAFEPVVEARVSPAG*

>peptide 2 (62 aa)
MISKLRLPLHDLREHRRHNFRQNRQNIGLKQNHRSQTRSDPCPVHKSQSFLWLQLKKGRYSG*

>peptide 3 (76 aa)
LPITNRREHFIKLLTRRPNTLSTQQLSLQLLPHKPVQRIRPTFLNPVTYNRTPSLILTPNTLHFLRRMQLAVNTNR*

>peptide 4 (79 aa)
MTSANIADITSDKTAKTLVSNRTIEARPDPTPVPFTRASPSFGCSSKKDGTPASLKASEAVRVSPAGPTAFELGRPVSSP

>peptide 5 (39 aa)
TFPSQIAENTLSNSSPGDLTLSPLNSSVSSSSLTNRYNG*

Sequence

>CNT3075415
ACCTTCCCATCACAAATCGCCGAGAACACTTTATCAAACTCCTCACCCGGCGACCTAACACTCTCTCCACTCAACAGCTCAGTCTCCAGCTCCTCCCTCA
CAAACCGGTACAACGGATAAGACCGACATTCCTTAATCCGGTTACCTATAACCGAACACCCTCCCTCATACTCACTCCTAACACGCTCCACTTCCTTAGA
CGGATGCAGCTCGCCGTTAACACCAACCGTTAACACCCGTTTCGCCACCTGGCTCACCGCGGCTTTAACAGCTTTCTTGAGATTCTCTTCGATATGACGC
AGATCAACGGCTTGGCATAAGGCAACCAAGTAGGTCGTGGACATCAGCTTGAGGATCTCAACAGCTTCTTCTGTCTTCCGACTCGAGATCAGCCCTAGCG
AGTTAACGTCTTGGTTATGCTGCTCGGCGCTCTGGACGTGGTTGGTCACGGGGTTAGCCAAGAACTGGAGCTCCGAGCAGTAAGAAGCCATGGCGATCTC
CGCGCCTTTGAACCCGTAGTCGAGGCTAGGGTTTCTCCCGCCGGATAGGTTTGAAGCGGATCCAGTTCATGAAGCTGCTGAGCTTCTTTAACGTAAGAGC
TTCCATGTAATATATGTTCCATAATCGCAGCGGCTTCAATCTGACCAGGATGGTGCTTGAGCTTATGCGTTAGATGATCAGTAAACTCCGGCTTCCCTTG
CATGACCTCCGCGAACATCGCAGACATAACTTCAGACAAAACCGCCAAAACATTGGTCTCAAACAGAACCATCGAAGCCAGACCCGATCCGACCCCTGTC
CCGTTCACAAGAGCCAGTCCTTCCTTTGGCTGCAGCTCAAAAAAGGACGGTACTCCGGCTAGCTTAAAGGCATCGGAGGCAGTGAGAGTCTCACCGGCGG
GACCCACGGCTTTTGAATTGGGACGGCCGGTGAGTAGTCCG