Detailed information on CNT30576230


BLAST search results

BLAST vs Swiss-Prot:
sp|P14717|PAL1_ORYSJ, E-value = 2e-29

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691552Oryza barthiiOryza sativa5015.287.97133forward
CNT30533207Oryza barthiiEucalyptus grandis20.686.990.9155forward
CNT30226002Oryza barthiiHordeum vulgare43.9839.5384.62117forward
CNT30553532Oryza barthiiOryza glaberrima52.6318.4599.29140forward
CNT30244035Oryza barthiiAvena sativa24.444.5586.1565forward
CNT30466309Oryza barthiiSaccharum spontaneum51.1319.687.5136forward
CNT30139541Oryza barthiiLolium perenne38.3510.1186.27102forward
CNT30100237Oryza barthiiOryza rufipogon29.324.8988.4678forward
CNT30583892Oryza barthiiEchinochloa crusgalli35.7116.184.2195forward

Expression of CNT30576230

Peptides detected in this lncRNA

>peptide 1 (87 aa)
LILLVIGAVPVSNATRAASISLGSASRSSSSNAVILENTEEPSAFSLKRALWRPPAGPVVSTFLATVVTQFLTALLRFSSRWRRSMAW

>peptide 2 (87 aa)
LDPVGDRRGAGLERHARRLHLPGQRLAELLLERGDLGEHGGAVGLLAEARAVEAAGGARGEHLLGHRRHAVLDGALEVLLQVAQVDGL

Sequence

>CNT30576230
CCTTGATCCTGTTGGTGATCGGCGCGGTGCCGGTCTCGAACGCCACGCGCGCCGCCTCCATCTCCCTGGGCAGCGCCTCGCGGAGCTCCTCCTCGAACGC
GGTGATCTTGGAGAACACGGAGGAGCCGTCGGCCTTCTCGCTGAAGCGCGCGCTGTGGAGGCCGCCGGCGGGGCCCGTGGTGAGCACCTTCTTGGCCACC
GTCGTCACGCAGTTCTTGACGGCGCTCTTGAGGTTCTCCTCCAGGTGGCGCAGGTCGATGGCCTGG