« Back to Oryza rufipogon search


Detailed information on CNT30100429


BLAST search results

BLAST vs Swiss-Prot:
sp|Q0DZE0|PAL2_ORYSJ, E-value = 0.0

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691552Oryza rufipogonOryza sativa25.0738.8692.65340forward
CNT30640936Oryza rufipogonNymphaea colorata13.9438.2682.54189forward
CNT30533290Oryza rufipogonEucalyptus grandis34.5939.2185.29469forward
CNT30162464Oryza rufipogonPistacia vera16.0840.7579.82218forward
CNT3096379Oryza rufipogonSolanum tuberosum8.5528.0982.76116forward
CNT30189069Oryza rufipogonSecale cereale7.3723.1593100forward
CNT30286106Oryza rufipogonTriticum aestivum22.299.6779.4301forward
CNT30225274Oryza rufipogonHordeum vulgare8.747.5892.37118forward
CNT30435636Oryza rufipogonAegilops tauschii33.6366.0983.11456forward
CNT30244654Oryza rufipogonAvena sativa74.8546.0781.871015forward
CNT30466309Oryza rufipogonSaccharum spontaneum35.4769.3190.85481forward
CNT30135526Oryza rufipogonLolium perenne47.5775.5382.64645forward
CNT3024809Oryza rufipogonPopulus trichocarpa18.5124.379.68251forward
CNT30583892Oryza rufipogonEchinochloa crusgalli20.5847.2986.74279forward
CNT3040161Oryza rufipogonMarchantia polymorpha26.4724.9583.57359forward

Expression of CNT30100429

Peptides detected in this lncRNA

>peptide 1 (33 aa)
TLVPQLIQIYSTKSFRKLRARPCGTAGYGNRRS*

>peptide 2 (38 aa)
YFSPPTYTNLQHKKFQKAACQAMRNCRLWQPQKLKQQQ*

>peptide 3 (57 aa)
MLSIFQFCVAIRLLVLHFFWYSNSVQQSGSGAPFHSLRYSVLIQGFSRWAGARRSTP*

>peptide 4 (76 aa)
MTQLLTALLTFSSICRRSTAWQRAIKNVEDMSFRMSIASSVFLEEMSPRELTSWLCCSALWTWLVTGLPKNCSSEQ*

>peptide 5 (44 aa)
MSLPMAAMARRVLSMDTPMGVPWKLPPCSALPRETSMSGLSFTEL

>peptide 6 (57 aa)
MGRGAPFHSLRHSSSGSMCLPWLMATSTLFSSSPGDRVFSPVRYAVPSSSRTNRYSG*

Sequence

>CNT30100429
TACTTTAGTCCCCCAACTTATACAAATTTACAGCACAAAAAGTTTCAGAAAGCTGCGTGCCAGGCCATGCGGAACTGCAGGTTATGGCAACCGCAGAAGC
TGAAACAGCAACAGTAACATCAAGTTAACTACAAAGAACCGTAAAATAGTATCATCACCATGTTCATCTAGATATAGTAGAAAACATTCACACTCTCGAA
ATGCTCTCTATCTTTCAGTTTTGTGTTGCTATACGTCTTCTTGTTTTGCATTTTTTTTGGTATTCCAATTCTGTTCAGCAGAGTGGCAGTGGCGCGCCAT
TCCATTCCTTGAGGTACTCGGTTCTGATACAGGGGTTTAGCAGATGGGCAGGGGCGCGCCGTTCCACTCCTTGAGACACTCAAGCAGCGGATCAATGTGC
TTGCCTTGGTTGATGGCGACGAGCACCTTGTTCAGCTCCTCGCCGGGCGACCGCGTCTTCTCGCCGGTGAGGTACGCGGTTCCGAGCTCCTCGCGCACAA
ACCGGTACAGTGGGTAGGAGCGGCACTCGGTGATTCTGTTGGGCGTTGCCGCCGTGCCGTTCTCCACAGCTGCCCGTGCGGCCAACACCGCCGCTGGCAG
CGCCGCGCGGAGCTCCTCCTCGAACTGGGCGACCTTGGCGAACACCGAGGTCTCGGCGTTGAACTCGGCCGCGCCGTTGGCGAGGGCGCGCTCCACAAGC
ACGTTCCGGAGCTTCTTCATCAGCGGGTAGTTGGCGCTGCACGGGTCGTCGGCGTACGCGAACACGGCTTCGCGGTCGATCTCCTGGAGAAGATCCTTCT
CGCAGAAGCGAGCGGCGTGGAGACCGCCGGTGGCGCTCGTGCTCAGAGTCTTCCTGGCCACTGTCATGACGCAGCTCTTGACGGCGCTCTTGACGTTCTC
CTCGATTTGCCGCAGGTCGACGGCCTGGCAGAGGGCGATCAAGAACGTGGAGGACATGAGCTTCAGGATGTCGATTGCCTCGTCGGTCTTCCTGGAGGAG
ATGAGTCCAAGAGAGTTGACGTCCTGGTTGTGCTGCTCGGCGCTCTGGACGTGGTTGGTCACTGGGTTGCCCAAGAACTGCAGCTCGGAGCAGTAGGAGG
CCATGGCGATCTCGGCGCCCTTGAACCCGTAGTCCAAGCTCGGGTTGCGACCGCCAGACAGGTTGGATGGCAGGCCGTTGTTGTAGAAGTCGTTCACGAG
CTCCGAGAACTGCGCGAACATGAGCTTGCCGATGGCAGCGATGGCGAGGCGGGTGTTGTCCATGGACACGCCGATGGGCGTGCCCTGGAAGTTGCCACCG
TGCAGCGCCTTGCCGCGGGAGACGTCGATGAGCGGGTTGTCGTTCACGGAGTTGAT