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Detailed information on CNT30640936


BLAST search results

BLAST vs Swiss-Prot:
sp|P52777|PALY_PINTA, E-value = 7e-88

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691552Nymphaea colorataOryza sativa36.4420.5781.67180forward
CNT30533290Nymphaea colorataEucalyptus grandis25.5110.5484.13126forward
CNT30225299Nymphaea colorataHordeum vulgare15.9923.3784.8179forward
CNT30435636Nymphaea colorataAegilops tauschii47.9834.3579.32237forward
CNT30254573Nymphaea colorataAvena sativa10.3220.1692.1651forward
CNT3075415Nymphaea colorataBrassica juncea25.9113.685.94128forward
CNT30466309Nymphaea colorataSaccharum spontaneum27.9419.8888.41138forward
CNT30139541Nymphaea colorataLolium perenne38.2618.7383.07189forward
CNT3024809Nymphaea colorataPopulus trichocarpa21.6610.3683.18107forward
CNT30149709Nymphaea colorataBrachypodium distachyon27.1344.6785.07134forward
CNT30100429Nymphaea colorataOryza rufipogon38.2613.9482.54189forward
CNT30113881Nymphaea colorataFicus carica20.459.484.16101forward
CNT3040161Nymphaea colorataMarchantia polymorpha21.667.4485.98107forward

Expression of CNT30640936

Peptides detected in this lncRNA

>peptide 1 (46 aa)
MSLRISIDSADLRAEIKPRELTSWLCCSALWTWEVTGLARNWSSEV*

>peptide 2 (65 aa)
PDRRFADLLQVAEVDRLADGGHVGCHHELEDLDRLGGLAGGDQAEGVDVLVVLLGALDVGSDGVG*

Sequence

>CNT30640936
TTCCTGACCGTCGATTTGCTGACCTCCTCCAGGTGGCGGAGGTCGATCGCCTGGCAGATGGCGGACACGTAGGTTGCCATCATGAGCTTGAGGATCTCGA
TCGACTCGGCGGACTTGCGGGCGGAGATCAAGCCGAGGGAGTTGACGTCCTGGTTGTGCTGCTCGGCGCTCTGGACGTGGGAAGTGACGGGGTTGGCTAG
GAACTGGAGCTCCGAGGTGTAGGATGCCATGGCTATCTCCGCTCCCTTGTACCCGTAGTCGAGGCTCGGCACTGGGCCGCCATTGTAATAGTCGTTGACC
AGCTCGGAGAACTGAGCGAACATTAGCTTGCCGATGGCAGCGAGAGCTAGACGAACGTTGTCCATGGCGACGCCCACCGGCGTGCCTTGGAAGTTACCGC
CGTGAAGCGCCTTGTCCCGGGCCACATCGATGATGGGATTGTCGTTGACGGAGTTTATCTCCCGCTGGATCATCTGGGTGGCAACGCGGATCAC