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Detailed information on CNT30533290


BLAST search results

BLAST vs Swiss-Prot:
sp|Q42667|PALY_CITLI, E-value = 0.0

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691552Eucalyptus grandisOryza sativa28.4338.8687.65340forward
CNT30640936Eucalyptus grandisNymphaea colorata10.5425.5184.13126forward
CNT30317648Eucalyptus grandisCorylus avellana37.7977.9378.54452forward
CNT30517474Eucalyptus grandisJuglans regia12.7125.3380.92152forward
CNT30628619Eucalyptus grandisVigna unguiculata16.7221.9381200forward
CNT30162464Eucalyptus grandisPistacia vera39.0587.2980.09467forward
CNT30636617Eucalyptus grandisCapsicum annuum49.2545.2477.76589forward
CNT3092074Eucalyptus grandisSolanum tuberosum30.619.5579.51366forward
CNT30189069Eucalyptus grandisSecale cereale18.065082.87216forward
CNT30286106Eucalyptus grandisTriticum aestivum7.4429.4787.6489forward
CNT30225299Eucalyptus grandisHordeum vulgare13.4647.6388.2161forward
CNT30568715Eucalyptus grandisActinidia chinensis19.9848.9879.5239forward
CNT30510882Eucalyptus grandisSolanum lycopersicum25.3378.9178.88303forward
CNT30144087Eucalyptus grandisMedicago truncatula11.7141.6782.14140forward
CNT30435636Eucalyptus grandisAegilops tauschii20.9936.3885.26251forward
CNT30244654Eucalyptus grandisAvena sativa48.7526.4681.3583forward
CNT30466309Eucalyptus grandisSaccharum spontaneum46.3279.8386.28554forward
CNT30135526Eucalyptus grandisLolium perenne36.2950.8281.34434forward
CNT30573527Eucalyptus grandisVitis vinifera41.332.3580.77494forward
CNT30107267Eucalyptus grandisOryza longistaminata5.2725.6192.0663forward
CNT3024978Eucalyptus grandisPopulus trichocarpa50.3381.979.73602forward
CNT30329354Eucalyptus grandisDioscorea rotundata17.1423.1982.44205forward
CNT30149709Eucalyptus grandisBrachypodium distachyon11.9647.6786.71143forward
CNT30100429Eucalyptus grandisOryza rufipogon39.2134.5985.29469forward
CNT3040161Eucalyptus grandisMarchantia polymorpha40.5533.780.21485forward

Expression of CNT30533290

Peptides detected in this lncRNA

>peptide 1 (75 aa)
MGSGAPSQSLKHSSKGSISLPSHMAENTRSKSSPGEPTFSPVSKPVPSSSLTNLYNGYDLHPLILLAIAEFPLSN*

>peptide 2 (88 aa)
MSLPMEAMARRVLSMETPIGVPWKFPPWRALFLETSISGLSLTELISLSIILVAALITSIWGPSHCGDVRSAYRSCFGFWRGSISWSF*

>peptide 3 (70 aa)
MAWHRATRKVEDMSFSTSTASAVFLDEIRPKEFTSWLCCSALWTWLVTGLARNCSSEQYEAMAISAPLKP*

>peptide 4 (61 aa)
MESLVPGDVDQRVVVDRIDLPLDHFGGGPDHFDLGAEPLRGRAERVSVLLRLLERVHLVELL

>peptide 5 (54 aa)
MRQSSGFGKVSNRWEAEHHPSPSSTPAKDRSACPRTWRRTPDQSPRPASRPSPP*

>peptide 6 (37 aa)
MEVLGFISRSTSSSASSTRTCLSFCIRGYVALQGSSM*

Sequence

>CNT30533290
GGGCAAGTTAAATTATGAGGCAGTCTTCAGGATTTGGAAAAGTTTCTAACAGATGGGAAGCGGAGCACCATCCCAGTCCCTCAAGCACTCCAGCAAAGGA
TCGATCAGCTTGCCCTCGCACATGGCGGAGAACACCAGATCAAAGTCCTCGCCCGGCGAGCCGACCTTCTCCCCCGTGAGCAAACCGGTCCCGAGCTCTT
CCCTCACGAACCTGTACAATGGGTACGACCTGCACCCCCTGATCTTGTTAGCGATCGCCGAGTTCCCGCTCTCGAACTGAGCTCTCGCGTTCTCGACCTC
CTTCGGGAGGAGTGCCTTGAGCTCCTCCTCGAAAGTCCCAATCTTCTGGAAGATGGAGGTGCTGGGGTTCATCTCCCGGTCGACGTCGTCCAGCGCATCG
TCCACGAGGACCTGCCTCAGCTTCTGCATCAGGGGGTACGTGGCGCTGCAGGGGTCATCGATGTAGGCGAAGACGTACTCCCGGTCGACCACCTTGATCA
GGTCTTTCTCGCTGAACCGCGACGGGTGGAGCTCGCCGTTGGACCCGACGTAGAGGACCTTCTTGGCCACTTGGTTCACCGTGTTCTTGACCACGCTCTT
GAGGTTCTCTTCCAGGTGCCTCAGGTCGATGGCCTGGCACAGGGCGACCAGGAAGGTGGAGGACATGAGCTTCAGCACGTCGACGGCCTCGGCGGTCTTC
CTCGACGAGATCAGGCCCAAGGAGTTCACGTCCTGGTTGTGTTGCTCCGCGCTCTGGACATGGTTGGTCACAGGGTTGGCAAGAAACTGCAGCTCCGAGC
AGTATGAGGCCATGGCTATCTCAGCTCCCTTGAAGCCGTAATCCAAGCTTGGGTTCCGTCCCCCGGACAGGTTAGAGGGCAGCCCGTTGTTGTAGAAGTC
GTTGACGAGCTCGGAGAACTGCGCGAACATGAGCTTGCCGATGGAGGCGATGGCGAGACGGGTGTTGTCCATGGAAACGCCAATCGGGGTCCCCTGGAAG
TTCCCTCCATGGAGAGCCTTGTTCCTGGAGACGTCGATCAGCGGGTTGTCGTTGACAGAATTGATCTCCCTCTCGATCATTTTGGTGGCGGCCCTGATCA
CTTCGATCTGGGGGCCGAGCCACTGCGGGGACGTGCGGAGCGCGTATCGGTCCTGCTTCGGCTTCTGGAGAGGGTCCATCTCGTGGAGCTTTTGAG