« Back to Corylus avellana search


Detailed information on CNT30317648


BLAST search results

BLAST vs Swiss-Prot:
sp|P35512|PALY_MALDO, E-value = 4e-86

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691552Corylus avellanaOryza sativa36.0323.8978.95209forward
CNT30533290Corylus avellanaEucalyptus grandis77.9337.7978.54452forward
CNT30517474Corylus avellanaJuglans regia23.2822.591.11135forward
CNT30615983Corylus avellanaSesamum indicum2529.8480145forward
CNT30727763Corylus avellanaCorchorus capsularis2014.4885.34116forward
CNT3070920Corylus avellanaQuercus suber22.5937.7590.84131forward
CNT30196554Corylus avellanaPisum sativum24.1429.8582.14140forward
CNT30162471Corylus avellanaPistacia vera76.953.6780.04446forward
CNT30636813Corylus avellanaCapsicum annuum33.9711.5683.25197forward
CNT3096043Corylus avellanaSolanum tuberosum33.9719.7282.74197forward
CNT30568715Corylus avellanaActinidia chinensis65.8678.2879.84382forward
CNT30510882Corylus avellanaSolanum lycopersicum33.9751.383.25197forward
CNT30144087Corylus avellanaMedicago truncatula49.4885.4279.79287forward
CNT30435636Corylus avellanaAegilops tauschii32.7627.5481.05190forward
CNT30244105Corylus avellanaAvena sativa29.8310.5279.77173forward
CNT30466309Corylus avellanaSaccharum spontaneum33.9728.3979.19197forward
CNT30135526Corylus avellanaLolium perenne34.8323.6579.7202forward
CNT30607757Corylus avellanaGossypium raimondii16.3832.3184.2195forward
CNT30203244Corylus avellanaHelianthus annuus24.6637.1480.42143forward
CNT30620237Corylus avellanaCajanus cajan47.5932.0978.26276forward
CNT30573527Corylus avellanaVitis vinifera97.413779.47565forward
CNT3024838Corylus avellanaPopulus trichocarpa98.4546.4281.26571forward
CNT3036865Corylus avellanaCucumis melo29.3135.2785.29170forward
CNT30329128Corylus avellanaDioscorea rotundata76.917.5579.15446forward
CNT30113881Corylus avellanaFicus carica93.2850.3780.04541forward

Expression of CNT30317648

Peptides detected in this lncRNA

>peptide 1 (46 aa)
MCSSSSLCRRCSTRAPPGLASASASMGMLRCKGRRCRRKRTLGPQL*

>peptide 2 (32 aa)
MSFKMSTASAVFLDEMNPKEFTSWLCCSALWT*

>peptide 3 (90 aa)
SCALYFFWQKDLKLLLEGSNLLENGCAQVPLFVAVAQRVLHQDLPQLLHQWVCCAARVVDVGENVLSVHNFEQVLFTKPGWVKLAIRSHG*

>peptide 4 (61 aa)
ILALSTSFGKRTLSSSSKDPIFWKMDVLKFLSLSPLLNACSTRTCLSFCINGYVALQGSSM*

Sequence

>CNT30317648
ATTCTTGCGCTCTCTACTTCTTTTGGCAAAAGGACCTTAAGCTCCTCCTCGAAGGATCCAATCTTTTGGAAAATGGATGTGCTCAAGTTCCTCTCTTTGT
CGCCGTTGCTCAACGCGTGCTCCACCAGGACTTGCCTCAGCTTCTGCATCAATGGGTATGTTGCGCTGCAAGGGTCGTCGATGTAGGCGAAAACGTACTC
TCGGTCCACAACTTTGAGCAAGTCCTTTTCACAAAACCTGGATGGGTGAAGCTCGCCATTAGATCCCATGGTTAGGACTCTCTTCGCCACTTGACTCACT
GTATTCTTGACTGTGTTCTTCAGGTTCTCCTCCAAATGTCGCAGATCAATTGCTTGACATAATGCGACTAAGAAAGTGGATGACATGAGCTTCAAAATGT
CCACGGCCTCGGCTGTCTTTCTTGACGAAATGAACCCCAAGGAGTTCACATCTTGGTTATGTTGCTCAGCGCTTTGGACATGATTGGTGACAGGATTGGC
TAGGAATTGGAGTTCGGAGCAATAAGATGCCATGGCAATTTCTGCACCTTTGAATCCATAATCCAGGCTTGGATTGCGGC