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Detailed information on CNT3024838


BLAST search results

BLAST vs Swiss-Prot:
sp|P45731|PAL1_POPKI, E-value = 0.0

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691552Populus trichocarpaOryza sativa16.7523.5480.58206forward
CNT30317648Populus trichocarpaCorylus avellana46.4298.4581.26571forward
CNT30630760Populus trichocarpaVigna unguiculata12.620.5381.29155forward
CNT30162471Populus trichocarpaPistacia vera59.7688.4581.9735forward
CNT30173113Populus trichocarpaTrifolium pratense17.8998.2180.91220forward
CNT30466309Populus trichocarpaSaccharum spontaneum17.9731.8480.54221forward
CNT30135526Populus trichocarpaLolium perenne17.7225.5382.57218forward
CNT30101950Populus trichocarpaOryza rufipogon23.1762.579.3285forward
CNT30113881Populus trichocarpaFicus carica45.3751.9680.65558forward

Expression of CNT3024838

Peptides detected in this lncRNA

>peptide 1 (49 aa)
MCLRSTAWHRPTKKVVDMSFNMSTASAVFLEEIKPRELTSWLCCSALWT*

>peptide 2 (36 aa)
MSLPIEAMAKRVLSIETPIGVPWKFPPCRALFLDTSI

>peptide 3 (37 aa)
DNIGIQFACYEQIDMASKLSKKKEKRKKKDDYRTSIA*

>peptide 4 (38 aa)
MIGDRIGKELELRTVRCHGNFGTFEPVIQAWIAATSEV*

Sequence

>CNT3024838
AGACAACATAGGCATACAGTTTGCTTGTTACGAACAAATTGACATGGCAAGTAAGCTTAGTAAGAAAAAAGAAAAAAGAAAAAAAAAAGATGATTACAGG
ACATCCATAGCTTAGCAAATAGGAAGAGGAGCACCATCCCATTCCTTCAAGCATTCCAGCAAGGGATCAATCAACTTCCCTGCACAGATAGCTGTGAAAA
CCTTGTCGAACTCCTCGCCGGGCGATTTGACCTTCTCACCTGTTAGCAAACTAGTTCCCAATTCTTCCCTCACAAACTTGTACAGGGGGTATGACCTGCA
TTCCTTGATCCTGTTTGGAATAGCTGGATTTCCATTCTCAACTTCAAGTCTAGCACTCTCCACTTCTTTAGGCAAAAGGTTCCCAATTCTTCCCTCACAA
ACTTGTACAGGGGGTATGACCTGCATTCCTTGATCCTGTTTGGAATAGCTGGATTTCCATTCTCAACTTCAAGTCTAGCACTCTCCACTTCTTTAGGCAA
AAGGGTCTTCAGTTCTTCCTCAAAAGATCCGATCTTTTGGAAAATCGAAGTGGTTGAATTCCTTTCCCTTTCGCCATTCACCAAGGCATGCTCGACTAGT
ACTTGCCTTAGATTTTGCATTAATGGATAGGTTGCACTGCAAGGATCGTCAATGTAGGAAAATACATGTTCTCTGTCAACAACCTTGAGCAAGTCTTTTT
CACAGAATCGTGAAGGGTGAAGCTCGCCATTGAAGCCCATTGTCAAGACTCTCTTGGCAACTTGGCTGACAGTGTTCTTGACTGTGCTCTTCAGGTTCTC
CTCTATGTGCCTCAGGTCAACGGCTTGGCATAGACCAACCAAGAAAGTGGTAGACATGAGCTTCAATATGTCAACAGCTTCAGCAGTTTTTCTTGAAGAA
ATCAAGCCCAGGGAGTTGACATCTTGGTTGTGTTGCTCGGCACTCTGGACATGATTGGTGACAGGATTGGCAAGGAATTGGAGCTCCGAACAGTAAGATG
CCATGGCAATTTCGGCACCTTTGAACCCGTAATCCAAGCTTGGATTGCGGCCACCAGTGAGGTTTGAAGGCAATCCATTGTTGTAAAAGTCGTTAACAAG
TTCAGAGAACTGTGCAAACATGAGTTTGCCAATTGAGGCAATGGCCAAACGAGTGTTGTCCATTGAAACACCAATAGGGGTCCCCTGGAAATTCCCTCCA
TGTAGAGCCTTATTCCTCGACACGTCAATC