Detailed information on CNT30244105


BLAST search results

BLAST vs Swiss-Prot:
sp|Q43210|PALY_WHEAT, E-value = 0.0

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691552Avena sativaOryza sativa19.6436.9187.93323forward
CNT30317648Avena sativaCorylus avellana10.5229.8379.77173forward
CNT30636617Avena sativaCapsicum annuum26.5733.5678.72437forward
CNT30178786Avena sativaSecale cereale26.8165.1487.3441forward
CNT30435636Avena sativaAegilops tauschii41.9510086.52690forward
CNT30466309Avena sativaSaccharum spontaneum32.3476.6687.78532forward
CNT30135526Avena sativaLolium perenne51.9110092.27854forward
CNT30573527Avena sativaVitis vinifera26.9929.0880.41444forward
CNT30329128Avena sativaDioscorea rotundata27.0517.5179.78445forward

Expression of CNT30244105

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MCGVHTYLASASSMGRARRASLPASCRSCL

>peptide 2 (37 aa)
MCLPLFMATNTLSTSSPGDLVFSPVKYSVPSSLRTKR*

>peptide 3 (37 aa)
MCLPLFMATNTLSTSSPGDLVFSPVKYSVPSSLRTKR*

>peptide 4 (63 aa)
MNVEDMSFRMSMASAVFLEEMRPRELTSWLCCSALCTWLVTGLPKNWSSEQYEAMAISAPLKP*

>peptide 5 (65 aa)
MRFCCAAVPFSTAHRADSTSLGSAARSSSSNVASLANTEVCTSRSASPLAKACSTRTARIFCISG*

>peptide 6 (68 aa)
MTGTRRCGSAVRQCRSPRHTGQTRPPLEAPHGAPPRMWRAWRTLKSAHPARPHHWPRRAPRELHASSA*

>peptide 7 (49 aa)
MVSHRVAQELELGAVRGHGNLSTLEAVVQARVAPTREVGRQTIVVEVVH*

>peptide 8 (60 aa)
MSLPMAAMASLVLSMDTPMGVPWKLPPWIAFPRETSMSGLSLTELISRSIDLVAARMTSI*

Sequence

>CNT30244105
GTCCAATATCATTATATACTTATTATCACAAAGTGTACCCTTTTACTGTAACTAACACCATATAAGTTGTACAGGCTAAACACCACTACCCAGTAATGTA
ATTATCTTTTCCAGCTGGCACTGCACCCGTGGAAGAACGTTGCCAACATTGACAACCGGAAATACAACGAAAAAACAGTATGAACCCTTCTGAATTCTGA
AGTGCTCAATTTTCAGTTCTTTGATTCAGTCTTCAGCAGATAGGCAGGGGCTCACCGTTCCACTCCTTGAGGCACTCAAGCAGAGCGTCGATGTGCTTGC
CCTTGTTCATGGCAACGAACACCTTGTCCACCTCTTCACCAGGAGACCTCGTCTTCTCTCCGGTCAAGTACTCCGTCCCGAGCTCCTTGCGCACGAAGCG
GTAGAGCGGGTNNNNNNNNNNCCTTCTGAATTCTGAAGTGCTCTATTTTACAGTTCCTTGATTCAGTCTTCAGCAGATAGGCAGGGGCTCACCGTTCCAC
TCCTTGAGGCACTCAAGCAGAGCGTCGATGTGCTTGCCCTTGTTCATGGCAACGAACACCTTGTCCACCTCTTCACCAGGAGACCTCGTCTTCTCTCCGG
TCAAGTACTCCGTCCCGAGCTCCTTGCGCACGAAGCGGTAGAGCGGGTATGACCGGCACTCGGCGATGCGGTTCTGCTGTGCGGCAGTGCCGTTCTCCAC
GGCACACCGGGCAGACTCGACCTCCCTTGGAAGCGCCGCACGGAGCTCCTCCTCGAATGTGGCGAGCTTGGCGAACACTGAAGTCTGCACATCCCGCTCG
GCCTCACCATTGGCCAAGGCGTGCTCCACGAGAACTGCACGCATCTTCTGCATAAGTGGGTAGTTGGCGCTGCAAGGGTCATCTGCGTAGGCGAACACGG
CCTCACGGTCGATCGTCAAGAGCAGGTCCTTCTCGCAGAAGCGTGCGTTGTGGAGATTGCCATTGTGATTGGTGCTCAGGGTCTTCCTTGCCACCGTCTT
CACACAGTTCTTGACAACATTCTTGACATTCTCCTCAAGGTGGCGCAGATCGATAGCTTGGCACAACGCAACCATGAATGTTGAGGACATGAGCTTCAGA
ATGTCGATGGCCTCAGCGGTCTTCCTGGAAGAGATGAGACCGAGAGAGTTGACGTCTTGGTTGTGTTGCTCCGCACTCTGCACATGGTTAGTCACAGGGT
TGCCCAAGAATTGGAGCTCGGAGCAGTACGAGGCCATGGCAATCTCAGCACCCTTGAAGCCGTAGTCCAAGCTCGGGTTGCGCCCACCAGAGAGGTTGGA
AGGCAAACCATTGTTGTAGAAGTCGTTCACTAGCTCTGAGAACTGGGCAAACATGAGCTTGCCGATGGCAGCAATGGCAAGCCTGGTGTTGTCCATGGAC
ACACCGATGGGCGTGCCCTGGAAGTTGCCGCCGTGGATAGCCTTCCCACGGGAGACATCAATGAGTGGGTTGTCGTTGACGGAGTTGATCTCGCGCTCGA
TTGACTTGGTTGCAGCACGGATGACCTCAATTTGAGGTCCAAGCCACTGTGGCGATGTGCGGAGTGCATACCTATCTTGCTTCGGCTTCATCAATGGGTC
GAGCTCGCCGAGCTTCTTTGCCAGCATCATGTAGGAGCTGCCTTC