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Detailed information on CNT30435636


BLAST search results

BLAST vs Swiss-Prot:
sp|Q43210|PALY_WHEAT, E-value = 3e-146

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691552Aegilops tauschiiOryza sativa36.6728.9190.12253forward
CNT30640936Aegilops tauschiiNymphaea colorata34.3547.9879.32237forward
CNT30533290Aegilops tauschiiEucalyptus grandis36.3820.9985.26251forward
CNT30317648Aegilops tauschiiCorylus avellana27.5432.7681.05190forward
CNT30517474Aegilops tauschiiJuglans regia18.1220.8382.4125forward
CNT30162464Aegilops tauschiiPistacia vera25.0732.3480.35173forward
CNT3096379Aegilops tauschiiSolanum tuberosum17.2528.8182.35119forward
CNT30178786Aegilops tauschiiSecale cereale43.1944.0293.29298forward
CNT30286106Aegilops tauschiiTriticum aestivum43.7710099.01302forward
CNT30225299Aegilops tauschiiHordeum vulgare23.0447.0487.42159forward
CNT30568715Aegilops tauschiiActinidia chinensis20.7229.383.22143forward
CNT30510882Aegilops tauschiiSolanum lycopersicum17.2530.9981.51119forward
CNT30244105Aegilops tauschiiAvena sativa10041.9586.52690forward
CNT3075415Aegilops tauschiiBrassica juncea22.0316.1584.21152forward
CNT30466309Aegilops tauschiiSaccharum spontaneum39.4239.1985.29272forward
CNT30135526Aegilops tauschiiLolium perenne95.5177.1786.8659forward
CNT30364646Aegilops tauschiiSorghum bicolor38.8424.4180.97268forward
CNT30573527Aegilops tauschiiVitis vinifera23.0410.4185.53159forward
CNT3037983Aegilops tauschiiCucumis melo26.8126.3580185forward
CNT30149709Aegilops tauschiiBrachypodium distachyon18.1241.6784.8125forward
CNT30100429Aegilops tauschiiOryza rufipogon66.0933.6383.11456forward
CNT30592972Aegilops tauschiiEragrostis curvula18.5535.2685.94128forward
CNT30113881Aegilops tauschiiFicus carica28.9918.6283200forward
CNT3040158Aegilops tauschiiMarchantia polymorpha21.7419.5382.67150forward

Expression of CNT30435636

Peptides detected in this lncRNA

>peptide 1 (55 aa)
MAEVDGLAQGDHECGGHELEYVNGLGGLPGGDETKRVDILVVLLGALDMVGHRVA*

>peptide 2 (70 aa)
MAWHKATMNVEDMSLSMSMASAVFLEEMRPRELTSWLCCSALWTWLVTGLPKNWSSEQYEAMAISAPLNP*

>peptide 3 (45 aa)
MSPCRARPHHWPRRAPREPHASSASAGSWRCKGRLHTRTPPHGQS*

Sequence

>CNT30435636
GTCCCAAGCTCCTTGCGCACGAACCTGTAGAGCGGGTATGACCGGCATCCGGTGATACGGTTATGCTGTGTGGCGGTGCCGTTCTCCACGGAGGACCGGG
CAGCCTCAACCTCCTTTGGTAACACTGCACGGAGCTCCTGCTCGAAGGCGGCAAGCTTGGCAAAGACAGATGTCTCCATGTCGTGCTCGGCCTCACCATT
GGCCAAGGCGTGCTCCACGAGAACCGCACGCATCTTCTGCATCAGCGGGTAGTTGGCGCTGCAAGGGTCGTCTGCATACGCGAACACCGCCTCACGGTCA
ATCGTGAGCAGCAGGTCCTTCTCGCAGAATCGCGCATTGTGGAGGTGCCCATTGTTGGTGGTGCTCAATGTCTTCCTGGCCGTCATCTTCACACAGCTCT
TGACGGCATCCTTAACATTCTCCTCCAGATGGCGGAGGTCGATGGCCTGGCACAAGGCGACCATGAATGTGGAGGACATGAGCTTGAGTATGTCAATGGC
CTCGGCGGTCTTCCTGGAGGAGATGAGACCAAGAGAGTTGACATCTTGGTTGTGTTGCTCGGCGCTCTGGACATGGTTGGTCACCGGGTTGCCTAAGAAC
TGGAGCTCGGAGCAGTATGAGGCCATGGCAATCTCAGCACCCTTGAACCCATAGTCCAAACTCGGGTTGCGCCCGCCGGAGAGGTTGGAA