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Detailed information on CNT30553532


BLAST search results

BLAST vs Swiss-Prot:
sp|P14717|PAL1_ORYSJ, E-value = 2e-77

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691552Oryza glaberrimaOryza sativa41.2435.7787.54313forward
CNT30177347Oryza glaberrimaSecale cereale14.120.2785.05107forward
CNT30286106Oryza glaberrimaTriticum aestivum14.135.4386.92107forward
CNT30225299Oryza glaberrimaHordeum vulgare2249.4186.83167forward
CNT30242898Oryza glaberrimaAvena sativa20.4210.4485.16155forward
CNT30466309Oryza glaberrimaSaccharum spontaneum35.739.0588.93271forward
CNT30139541Oryza glaberrimaLolium perenne34.5225.9783.97262forward
CNT30364646Oryza glaberrimaSorghum bicolor21.7415.0383.64165forward
CNT30149709Oryza glaberrimaBrachypodium distachyon13.3133.6791.09101forward
CNT30576230Oryza glaberrimaOryza barthii18.4552.6399.29140forward
CNT30592972Oryza glaberrimaEragrostis curvula19.7641.3286.67150forward

Expression of CNT30553532

Peptides detected in this lncRNA

>peptide 1 (95 aa)
TNFNTCNQDSAILVYFTCKIQQRNQKAASQGHERCRRHGIAAAISHDYNTDKYSKLKKEKKTRTEKQRNLLMSVREAFRILNSSLSYFAGTTCSP*

>peptide 2 (74 aa)
MAVSRAFSLKRALWRPPAGPVVSTFLATVVTQFLTALLRFSSRWRRSMAWHSAIKNVEDMSLSTSMASAVFLDEM

>peptide 3 (39 aa)
MNAAGATALQQQSHTITTRINTASSKRKKKHGRRNNVIC*

Sequence

>CNT30553532
ACCAATTTCAACACATGTAATCAAGATAGCGCTATATTAGTATATTTCACTTGCAAAATACAACAACGGAATCAGAAAGCTGCCAGCCAAGGCCATGAAC
GCTGCAGGCGCCACGGCATTGCAGCAGCAATCTCACACGATTACAACACGGATAAATACAGCAAGCTCAAAAAGGAAAAAAAAACACGGACGGAGAAACA
ACGTAATCTGCTGATGAGCGTACGAGAAGCCTTCAGGATCCTGAATTCCTCCCTTTCTTATTTCGCGGGAACGACCTGCTCTCCTTGATCCTGTTGGTGA
TCGGCGCGGTGCCGGTCTCGAACGCCACGCGCGCCGCCTCCATCTCCCTGGGCAGCGCCTCGCGGAGCTCCTCCTCGAACGCGGTGATCTTGGAGAACAC
GGAGGAGCCGTCGTCCTTCTCGGCGGGGCCGTTGGCGAGGGCGTGCTCGACGAGCACGGCGCGGATCTTGGTCATCAGCGGGTAGTTGGCGCTGCACGGG
TCGTCGGCGTAGCTGTACACGGCCTCGCGGTCGATGGCGGTGAGCAGGGCCTTCTCGCTGAAGCGCGCGCTGTGGAGGCCGCCGGCGGGGCCCGTGGTGA
GCACCTTCTTGGCCACCGTCGTCACGCAGTTCTTGACGGCGCTCTTGAGGTTCTCCTCCAGGTGGCGCAGGTCGATGGCCTGGCATAGCGCGATCAAGAA
CGTCGAGGACATGAGCTTGAGCACGTCGATGGCCTCGGCCGTCTTCCTGGACGAGATGA