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Detailed information on CNT30135526


BLAST search results

BLAST vs Swiss-Prot:
sp|Q43210|PALY_WHEAT, E-value = 0.0

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30533290Lolium perenneEucalyptus grandis50.8236.2981.34434forward
CNT30317648Lolium perenneCorylus avellana23.6534.8379.7202forward
CNT30517474Lolium perenneJuglans regia27.2838.8380.26233forward
CNT30162464Lolium perennePistacia vera35.7157.0180305forward
CNT30636813Lolium perenneCapsicum annuum20.2610.1582.08173forward
CNT3095942Lolium perenneSolanum tuberosum34.0722.4780.07291forward
CNT30178786Lolium perenneSecale cereale31.2639.4488.01267forward
CNT30286106Lolium perenneTriticum aestivum35.3610085.1302forward
CNT30510882Lolium perenneSolanum lycopersicum13.9330.9983.19119forward
CNT30144087Lolium perenneMedicago truncatula15.8140.1882.22135forward
CNT30435636Lolium perenneAegilops tauschii77.1795.5186.8659forward
CNT30244105Lolium perenneAvena sativa10051.9192.27854forward
CNT30466309Lolium perenneSaccharum spontaneum54.867.4486.32468forward
CNT30573527Lolium perenneVitis vinifera40.9822.9281.71350forward
CNT3024838Lolium perennePopulus trichocarpa25.5317.7282.57218forward
CNT3037983Lolium perenneCucumis melo25.5331.0578.9218forward
CNT30329128Lolium perenneDioscorea rotundata40.7513.6981.9348forward
CNT30100429Lolium perenneOryza rufipogon75.5347.5782.64645forward
CNT30592972Lolium perenneEragrostis curvula11.5927.2788.8999forward
CNT30113881Lolium perenneFicus carica2620.6780.18222forward
CNT3040161Lolium perenneMarchantia polymorpha42.3925.1680.94362forward

Expression of CNT30135526

Peptides detected in this lncRNA

>peptide 1 (72 aa)
GYDRHSVMRFCCAAVPFSTAHRADSTSLGSTARSSCSNAASLANTDVCTSRSASPLAKACSTRTARIFCISG*

>peptide 2 (58 aa)
MSFKISMASAVFLAEMRPRELTSWLCCSALCTWLVTGLPKNWSSEQYEAMAISAPLNP*

>peptide 3 (47 aa)
MSLPIAAMASLVLSMDTPMGVPWKLPPWMALPRETSMSGLSLTELISR

>peptide 4 (36 aa)
MRQAWRTLTSAHPAQPHRWPRRAPRELHASSASVGS*

Sequence

>CNT30135526
GCGGGTACGACCGGCATTCGGTGATGCGGTTTTGCTGCGCGGCGGTGCCATTCTCCACAGCACACCGGGCTGACTCAACCTCCCTTGGAAGCACTGCACG
GAGCTCCTGCTCGAATGCGGCAAGCTTGGCGAACACTGACGTCTGCACATCCCGCTCAGCCTCACCGTTGGCCAAGGCGTGCTCCACGAGAACTGCACGC
ATCTTCTGCATCAGTGGGTAGTTAGCGCTGCAAGGGTCGTCTGCGTAGGCGAACACCGCCTCGCGGTCGATCGTCAGGAGCAGGTCCTTCTCGCAGAAGC
GTGCATTGTGTAGGTGCCCATTGTCATTGGTGCTGAGGGTCTTCCTAGCCACCATCTTCACACAGTTCTTGACAGCATTTTTGACATTCTCCTCGAGGTG
GCGGAGGTCAATAGCTTGGCACAGCGCGACCAAGAATGTCGATGACATGAGCTTCAAAATATCGATGGCCTCAGCGGTCTTCCTGGCGGAGATGAGACCG
AGAGAGTTGACGTCTTGGTTGTGTTGCTCCGCACTCTGCACATGGTTAGTCACAGGGTTGCCCAAAAATTGGAGCTCGGAGCAGTATGAGGCCATGGCAA
TCTCAGCACCCTTGAATCCATAGTCCAAGCTCGGGTTACGCCCACCAGAGAGATTGGAAGGCAAACCATTGTTGTAGAGGTCATTCACTAGCTCCGAGAA
CTGGGCAAACATGAGCTTGCCGATCGCAGCAATGGCAAGCCTGGTGTTATCCATGGACACACCGATGGGTGTGCCCTGGAAGTTGCCACCATGGATGGCC
TTGCCTCGGGAGACATCAATGAGCGGGTTGTCGTTGACGGAGTTGATCTCGCGC