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Detailed information on CNT30149709


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691552Brachypodium distachyonOryza sativa3612.3493.52108forward
CNT30640936Brachypodium distachyonNymphaea colorata44.6727.1385.07134forward
CNT30533290Brachypodium distachyonEucalyptus grandis47.6711.9686.71143forward
CNT30162464Brachypodium distachyonPistacia vera43.3324.382.31130forward
CNT30189069Brachypodium distachyonSecale cereale24.3316.989.0473forward
CNT30225206Brachypodium distachyonHordeum vulgare2535.0597.3375forward
CNT30568715Brachypodium distachyonActinidia chinensis26.6716.398580forward
CNT30553532Brachypodium distachyonOryza glaberrima33.6713.3191.09101forward
CNT30435636Brachypodium distachyonAegilops tauschii41.6718.1284.8125forward
CNT30254575Brachypodium distachyonAvena sativa48.6713.7186.99146forward
CNT3075415Brachypodium distachyonBrassica juncea44.6714.2487.31134forward
CNT30466309Brachypodium distachyonSaccharum spontaneum4921.1893.2147forward
CNT30139541Brachypodium distachyonLolium perenne5014.8792.67150forward
CNT30364646Brachypodium distachyonSorghum bicolor32.678.9385.7198forward
CNT30573527Brachypodium distachyonVitis vinifera499.6382.99147forward
CNT3024809Brachypodium distachyonPopulus trichocarpa48.6714.1380.82146forward
CNT30101950Brachypodium distachyonOryza rufipogon49.6732.6891.28149forward
CNT30592972Brachypodium distachyonEragrostis curvula3528.9387.62105forward
CNT30113881Brachypodium distachyonFicus carica30.338.4785.7191forward
CNT3040158Brachypodium distachyonMarchantia polymorpha4718.3685.11141forward

Expression of CNT30149709

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MAVRRPREFTSWLCCSALCTWLVTGLARYWSSEQ*

>peptide 2 (99 aa)
GLALAGVVDAAAGERVVDEHGAQLLHQRVVGAAGVVGVAEHGLAVDGGQEAQGVHVLVVLLRALHVVGHRVGQVLELRAVGSHGDLGPLETVVQARVAAP

Sequence

>CNT30149709
GGCCTCGCTCTCGCCGGCGTTGTCGACGCCGCTGCTGGTGAGCGCGTGGTCGACGAGCACGGCGCGCAGCTTCTGCATCAGCGGGTAGTTGGCGCTGCAG
GCGTCGTCGGCGTAGCTGAACACGGCCTCGCGGTCGATGGCGGTCAGGAGGCCCAGGGAGTTCACGTCCTGGTTGTGCTGCTCCGCGCTCTGCACGTGGT
TGGTCACCGGGTTGGCCAGGTACTGGAGCTCCGAGCAGTAGGAAGCCATGGCGATCTCGGTCCCCTTGAAACCGTAGTCCAGGCTCGGGTTGCGGCTCCC