« Back to Pistacia vera search


Detailed information on CNT30162464


BLAST search results

BLAST vs Swiss-Prot:
sp|O64963|PAL1_PRUAV, E-value = 6e-114

BLAST vs NONCODE:
NONSTUT002996, E-value = 7e-86

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691552Pistacia veraOryza sativa41.3125.2678.28221forward
CNT30533290Pistacia veraEucalyptus grandis87.2939.0580.09467forward
CNT30517474Pistacia veraJuglans regia39.253584.76210forward
CNT3069045Pistacia veraQuercus suber43.9354.0287.23235forward
CNT30628619Pistacia veraVigna unguiculata47.6627.9683.14255forward
CNT30196554Pistacia veraPisum sativum72.1582.381.87386forward
CNT30225299Pistacia veraHordeum vulgare30.8448.8281.82165forward
CNT30510882Pistacia veraSolanum lycopersicum71.5999.7483.81383forward
CNT30435636Pistacia veraAegilops tauschii32.3425.0780.35173forward
CNT30244654Pistacia veraAvena sativa61.1214.8481.04327forward
CNT30466309Pistacia veraSaccharum spontaneum34.3926.5179.35184forward
CNT30135526Pistacia veraLolium perenne57.0135.7180305forward
CNT3036865Pistacia veraCucumis melo35.143983.51188forward
CNT30329128Pistacia veraDioscorea rotundata69.7214.6780.97373forward
CNT30149709Pistacia veraBrachypodium distachyon24.343.3382.31130forward
CNT30100429Pistacia veraOryza rufipogon40.7516.0879.82218forward

Expression of CNT30162464

Peptides detected in this lncRNA

>peptide 1 (71 aa)
TVFFKFSSKCLRSMAWQSATKYVEDMSFKMSTASAVFLEEMSPKEFTSWLCCSALWTWLVTGLARYWSSEQ*

>peptide 2 (38 aa)
NCVLQILLQVPQINGLAKCYQVCRRHELQDVNSFSSFP*

Sequence

>CNT30162464
TAACTGTGTTCTTCAAATTCTCCTCCAAGTGCCTCAGATCAATGGCTTGGCAAAGTGCTACCAAGTATGTAGAAGACATGAGCTTCAAGATGTCAACAGC
TTCAGCAGTTTTCCTTGAAGAGATGAGTCCCAAGGAGTTCACGTCTTGGTTGTGTTGCTCGGCACTTTGGACATGGCTGGTGACTGGATTGGCAAGGTAT
TGGAGCTCTGAACAATAGGAAGCCATGGCAATTTCAGCACCCTTGAAACCGTAATCCAAGCTTGGATTTCTGCCGCCAGAGAGATTTGATGGCAACCCAT
TGTTGTAAAAGTCGTTGACAAGCTCCGAAAATTGGGCAAACATAAGTTTTCCAATCAATGCAATAGCCAAACGTGTATTGTCCATTGAGACACCAATTGG
GGTCCCCTGGAAGTTGCCTCCATGTAAAGCCTTGTTCCTTGAAACATCGATCAGAGGGTTGTCATTGACGGAGTTGATCTCCCTTTCAATTGATTTGGTT
GAAAATCTGATAACTTCAATCAGTGGGCCAAGCCA