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Detailed information on CNT30190473

BLAST search results

BLAST vs Swiss-Prot:
sp|P43286|PIP21_ARATH, E-value = 2e-41

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30520501	Secale cereale	Setaria italica	33.25	10.44	88.05	251	forward
CNT30712585	Secale cereale	Glycine max	6.89	22.22	90.38	52	forward
CNT30225926	Secale cereale	Hordeum vulgare	23.58	26.22	96.07	178	forward
CNT30387873	Secale cereale	Triticum turgidum	35.63	52.95	85.5	269	forward
CNT30553402	Secale cereale	Oryza glaberrima	15.63	22.56	93.22	118	forward
CNT30437070	Secale cereale	Aegilops tauschii	40	61.13	90.73	302	forward
CNT30139319	Secale cereale	Lolium perenne	48.61	31.37	94.82	367	forward
CNT30227632	Secale cereale	Ananas comosus	18.94	21.22	90.21	143	forward
CNT30366377	Secale cereale	Sorghum bicolor	15.63	23.74	88.14	118	forward
CNT30596194	Secale cereale	Oryza meridionalis	15.23	26.44	93.04	115	forward
CNT30370054	Secale cereale	Oryza glumipatula	15.63	22.56	93.22	118	forward
CNT30109688	Secale cereale	Oryza longistaminata	14.17	20.19	93.46	107	forward
CNT30318651	Secale cereale	Asparagus officinalis	15.1	33.63	82.46	114	forward
CNT30575194	Secale cereale	Oryza barthii	10.99	40.49	93.98	83	forward
CNT30116009	Secale cereale	Oryza nivara	31.52	29.24	88.24	238	forward
CNT30113851	Secale cereale	Ficus carica	20.93	57.04	87.34	158	forward

Expression of CNT30190473

Peptides detected in this lncRNA

>peptide 1 (72 aa)
MVCTVRYSNHGPWAMQLARRFGIEYSPGCGSHGRCAWGRWRRRRCRQGRRSCRRRPRRFRGCRRRCRPRRWC*

>peptide 2 (39 aa)
MPPKAQAIPRMPTPLQAASVVLTVGSDWCLYPMTVATVM*

Sequence

>CNT30190473
ACTTTAGCCTTTAGGTTCACTAAAATGCTTCATTTTGTCAAGATTCGTGAACTTGCTTGCCCTATTCCTGCATACGCAATTGTGTGACCGCGAGAGCTCC
CTCACAAAAGTATTTTGCTACTATAGCACTGGTATGAGTTAAGAAGGGCAACGACTTTCCTAGCACTTTGATCTGCATCCAGTTCAAAGTCTACACCCAC
AGCATACGGACAAAGTCTACACCCTAAAGTGTACTTATCTTTTTGAGGGACACTGTAAAGTGTACTCTACGGTATAATATGGTATGTACTGTACGCTATA
GTAACCATGGCCCATGGGCGATGCAACTAGCGAGACGGTTCGGTATTGAGTACTCACCGGGATGTGGGAGTCACGGGCGTTGCGCTTGGGGTCGGTGGCG
GAGAAGACGGTGTAGACAAGGACGAAGATCATGCCGCCGAAGGCCCAGGCGATTCCGAGGATGCCGACGCCGCTGCAGGCCGCGTCGGTGGTGTTGACGG
TGGGGTCGGACTGGTGCTTGTACCCGATGACGGTGGCTACGGTGATGTAGAGGAAGAGGAGCGTGGCCACGAACTCGGCGATCACTGCGCGGTAGAGCGA
CCACTTGGTCAGCTCCTCGAAGCCCACGATCGGCGCCGGGGGCGGGTCCGAGTAGTCCTTGGTGGAGAACTCGCCCCCCTGGGGTGCCGCCTCAATGTCC
TTGGCCATTGCTAGCTCAACCTAGTGCCCTGTAGCTTGAATGGTGCTTGCTGCAG