Detailed information on CNT30520589


BLAST search results

BLAST vs Swiss-Prot:
sp|Q84RL7|PIP21_MAIZE, E-value = 7e-87

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30535437Setaria italicaEucalyptus grandis6.8143.9881.53157forward
CNT30375565Setaria italicaArabidopsis thaliana3.6934.4184.7185forward
CNT30387873Setaria italicaTriticum turgidum17.5779.7281.23405forward
CNT30586754Setaria italicaMusa acuminata3.933.3394.4490forward
CNT30612661Setaria italicaArabis alpina3.4727.6886.2580forward
CNT30681461Setaria italicaTriticum urartu6.0332.8689.93139forward
CNT30116009Setaria italicaOryza nivara19.3154.6782.47445forward

Expression of CNT30520589

Peptides detected in this lncRNA

>peptide 1 (78 aa)
MHAPFSREGTGTPNFVSGLWLLARDFTSADEPPPGSSPRHILTGWVARRQAMDRHHVPSPRRLTRKGCPLPLGYPDFT*

>peptide 2 (86 aa)
MGHNHTREGGEGEDVAERACPHHTTRTTGPDGPCATVEPRAGPGPAQLFTRAGGPACVPPPPDVTVPSCTVGEPARLTGAVKIWRT*

>peptide 3 (66 aa)
AIRLELLVHASKFSSHHHGLTFSKLKQDDRLLLKQVAKHFSKQVCQRQERLVAKKRRPSRHACPFL*

>peptide 4 (78 aa)
MAWDTITQGREGRGRTWPSVRALITRQGRLDPTDHVLQWSRGPDQAQLSFLRAPVGPRVYHHHRMLLCRHARWESQPG*

>peptide 5 (50 aa)
MGRAKAGHGQTSRSVTSPPHAKGMPTTTRLPRFHLATRYTFAPSVALDQR*

>peptide 6 (61 aa)
MCYSGAAGRTRPSSAFYARRWARVCTTTTGCYCAVMHGGRASQVDGSSKNLEDVKLQRFLQ*

>peptide 7 (32 aa)
MASWAIEACEGDPVALCRMLLWMFLNVPASVC*

>peptide 8 (47 aa)
MGRERNPFCLDAFERAKLDILLLLYCYYFPSSPEQRNFFLFACAQTV*

>peptide 9 (29 aa)
MPPKAHAMPRMPTPPHASVPATFGSVWCL*

Sequence

>CNT30520589
AGGCAATCAGATTAGAATTACTCGTGCATGCGTCCAAATTCTCGTCACATCATCATGGCCTAACATTTTCCAAACTAAAACAAGATGACAGGCTACTTCT
AAAGCAAGTGGCCAAGCATTTCTCCAAGCAAGTCTGTCAGCGTCAGGAACGATTAGTGGCTAAGAAAAGGAGACCCTCTCGTCATGCATGCCCCTTTCTC
TAGGGAAGGAACTGGAACACCAAACTTCGTTAGTGGCCTCTGGCTTTTAGCGCGCGACTTCACCTCGGCCGATGAACCACCACCAGGGTCCTCACCACGG
CATATTTTGACGGGATGGGTCGCGCGAAGGCAGGCCATGGACAGACATCACGTTCCGTCACCTCGCCGCCTCACGCGAAAGGGATGCCCACTACCACTAG
GCTACCCCGATTTCACCTAGCCACACGCTACACGTTTGCGCCTAGCGTTGCTTTGGACCAGCGGTGAATACGAATTCTTCAAATTCACTCCGTGTGTGGT
TACGTTTCAGTACGTACCATACGGTGGTCCGTGGAACCGTAGTACACGTTGGAGGATTTCAAGAACCAACGGTACGGTGCTAATAATTCATCATGGAGGG
GTGAGACGCTAGAGTCTAGAGAGGAGGCTCACATGGCATGGGACACAATCACACAAGGGAGGGAGGGGAGGGGGAGGACGTGGCCGAGCGTGCGTGCCCT
CATCACACGACAAGGACGACTGGACCCGACGGACCATGTGCTACAGTGGAGCCGCGGGCCGGACCAGGCCCAGCTCAGCTTTTTACGCGCGCCGGTGGGC
CCGCGTGTGTACCACCACCACCGGATGTTACTGTGCCGTCATGCACGGTGGGAGAGCCAGCCAGGTTGACGGGAGCAGTAAAAATCTGGAGGACGTAAAA
TTGCAGAGATTTCTACAGTAGTACTCCGTAGTAAAATTTCAAGTCTAGAGATAAGGTTGGAGCTGATTAGCCCCGGGTCTCTCTATCTGTATTTATTTAC
TTTACTGTTAGGTCCGGGGAGTCATGGCTAGCTGGGCTATTGAGGCCTGTGAGGGTGACCCGGTTGCGCTCTGCCGCATGCTCCTGTGGATGTTCTTGAA
TGTTCCAGCAAGTGTGTGTTAATAACGGTCATTATCAAGACTACGGAAGGCTTAATGACAGTTCTCCGTGTGTAGTGTACTAACCCCTTGAAAATTAAGT
TGTGATATTTAGAATATTTGGAGCTTAGGCATCCACACATCTCTTTCAACGGTCAATTATTTCTTTCTTTTGGACAATGGTTTAGCTGAATTTCAAGCTT
TTGTTCCTCTATCTAACAATAAGCAGCCTCGATGAATAACTTGTGTAACTAGGTACAGACTACTCTAAAAAAGACTAGGTGCAGACAAAATGAATCGTAA
GTGAACCTTTACCTTTCTATCCCCAGCAAAAAAACGTTCTATGGGCCGGGAAAGAAATCCCTTCTGCCTGGACGCCTTTGAAAGAGCCAAACTGGATATT
CTCTTGCTTTTATATTGTTATTATTTTCCTTCTTCACCGGAACAAAGGAATTTCTTTTTGTTCGCATGTGCCCAAACAGTATAGATGGGCAAGATTAGAG
CATGCTAGCATCGCTTGAGCTCTAATTAAGCTAAGTTCGCACAGACATGAAGTAAAAGAAGCTAATAAGCGAGCAAGCTAGCAGATCGAGAGAGAGAAAT
AAATAAAAGAAGAAAAAAGCAGGAGGCCGTGGCGTTGGTCGGGTGCTCACCGGAACGTGGGAGTCGCGGGCGTTGCGCTTGGGGTCGGTGGCGGAGAAGA
CGGTGTAGACGAGGACGAAGGTGCCGATGATCTCGGCGCCGAGGCCGGTGCCGCGGGAGTATCCGGAGGCGAGGGAGTTGGCGCCGCCGCCGTACCTGTC
GAAGTAGGCGCTCTGGAACGCCTTGACGAGGCCGAAGATCATGCCGCCGAAGGCCCACGCGATGCCGAGGATGCCCACGCCGCCGCACGCGTCGGTGCCG
GCCACGTTCGGGTCCGTCTGGTGCTTGTAACCGATGACGGTGAGCACGGTGATGTAGAGGAAGAGCAGCGTGGCGATGAACTCGGCGATGACGGCGCGGT
ACAGCGACCAGGAACCCAGCTCTGCCGCGTCGATCAGCGGCGCCGGGGGAGGGTCCGTGTAGTCCTTGGCGGCGAACTCGCCGCCGCCGGCGCCGCTCTC
GATCACGTCGTCCTTGCCCATGGCTTGGTCTTGGCTTAGCTTGGCAGCTGCGGGACTAGCCGGCCGGGTGCAGAGGTTGGCTTGCAAGAAATGGATGAGA
GTGGT