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Detailed information on CNT30145652


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SY97|LHCA3_ARATH, E-value = 3e-119

BLAST vs NONCODE:
NONBNAT006830, E-value = 9e-45

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30486017Medicago truncatulaOlea europaea25.5949.3479.1488forward
CNT30711417Medicago truncatulaGlycine max31.233.2484.71595forward
CNT30607765Medicago truncatulaGossypium raimondii11.1231.6985.38212forward
CNT30118654Medicago truncatulaCitrus clementina18.4165.2483.48351forward
CNT3037927Medicago truncatulaCucumis melo12.0648.1286.52230forward
CNT30725700Medicago truncatulaLupinus angustifolius29.5863.0284.22564forward

Expression of CNT30145652

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MHIYMLYSCVMGALLSKLMFYLGVGKKTKN*

>peptide 2 (37 aa)
MLVRRNLQALSQVLRSIVFPWSQDCTNLGIFCVLQIP*

>peptide 3 (38 aa)
MNPPVPSGSESPRGSNPKSPGRLQVMMRPNKVNFILDT*

>peptide 4 (40 aa)
MLNISSSCKCHFLQGHIMKHAHKMLRQESEEKEHIYNTFI*

>peptide 5 (30 aa)
MSLTSNMYEQQVITCIKKFNSFIFNYESRL*

>peptide 6 (47 aa)
MPFPSQRVCNCLPSSCMFPLVESRRFGTKGVLFPRELNLLCQEFQVL*

Sequence

>CNT30145652
GTTGATTAAATTGCAACAAAGAAGTTAACACACAAAGATGCTGAATATTTCTAGTTCTTGTAAATGTCATTTCTTACAAGGCCACATCATGAAACATGCT
CACAAGATGCTAAGACAAGAAAGTGAAGAAAAGGAGCATATATATAATACATTCATTTAGTGGAACTTGAGACTGGTCAAGATGTTGTTGTTGACAGGGT
CAGCCAAATGATCTAAGAGGTTTTGGTATGGTCCAACTCCTGTAACAAGAGCTTGAATAAAGTAACCCAATATTGCCAACATTGCTAACCTTCCATTCTT
AACTTCCTTCAGCTTTAATTCCTTCAATGATTTCTCATCTTTACCAAAACCAAGAGGGTTAAATATAGGTCCACCAGGGTATGCTGGTTCGCCGGAACCT
CCAAGCCCTTTCTCAAGTCCTAAGAAGTATTGTTTTCCCATGGAGCCAGGATTGTACCAATCTTGGAATCTTCTGTGTTCTGCAAATCCCATGAATGCCA
TTTCCATCACAAAGAGTGTGTAATTGTCTGCCCAGTAGTTGTATGTTCCCGCTGGTGGAATCACGCCGGTTTGGAACCAAGGGAGTGCTGTTTCCGCGGG
AATTAAACCTGCTTTGCCAAGAATTTCAGGTGCTATAGCTCCGGCTGCTCCCAACATTGCAAATCGGCCGTTGATTATCTCACCGTATGCTAACCATCTT
GGTTCAATGAATCCACCGGTTCCTTCGGGATCTGAAAGTCCTAGAGGGTCAAATCCAAAGTCACCCGGAAGGCTGCAAGTGATGATGAGGCCAAATAAAG
TCAATTTCATACTTGACACATAGTGTTACTCAACAAAGTTGCATGCATATCTACATGTTGTATAGTTGTGTTATGGGTGCTTTGTTATCCAAGCTTATGT
TCTACCTAGGGGTGGGCAAAAAAACCAAAAACTGAACTGAACTGAACAAAAAAAAACTGAACAATTACTAACAGTTCTGAAATTGAACTGAAACAATTCA
GTTCAGTTCGAAACAGTTTAGTTCGATTCGAAACAGTTCAGTTCGGTAACTAAAATTTAATTTCATTTGTTTTTTTTCATATTTTTTCAAAGGCATCAAT
AATAACAGTTCAGTTCAGTTCGGAACAGTTCAGTTCGGTTTGAAACAGTTCAGTTCAGTTATTTTAAATTTAACAAACAGTTCAGTTCGATTCAGTTTTC
ATCCTGAACTGAACCATGTCCACCCCTAGTTCTAACGCAATCACTTGTCTAAGTATTTGGATGAAACTATAAAGATAACTTTAAATGTGTTCACAAGTTG
TCTTTAGATTATTTCCATAGGTTTTGTAGAATAATTTATTAAAGTAAATAGTTTAATCATTTCATCTACTACTGTAAAATTAGATTAAGCATAATCATAA
ACGATAAATGATAATTAGTGCTTAATCGAAAAGATTTCGCAAAAGCCTTCTGAGATCTTAGACTCACAAAACATCTACCAGACATAGTTACCACAAGTAA
TATAAAAATAAAATAAAAAAAATTGGTACTCAAAACAAGTGTTATCCAACAAACTTGCATATCTACATGTTGTAATGTTGTGTTAAGGGTACTTAGTCGT
ATCTAATCTGAGCTTATGGCTCAACACAAGCACTTGCATAAGTAATTTGTTGAGATTGCAAAATTAAGTTAAAAATATTTCATAATTACATGTCTTTAAC
TTCAAACATGTATGAACAACAAGTAATAACTTGTATAAAAAAGTTCAATAGTTTCATCTTTAATTATGAAAGTAGATTATAAATAATCATAAGCGATAAT
AAACACTTGATCAAAACGTTTTACTTAGGCATACTCTAGGTTCTTAAATCTTACTCAAAAAACATCCACCTTACAATACTTTTTTCTTCAACTACAAAGG
AATTTAC