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Detailed information on CNT30236483


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673595Brassica oleraceaSetaria viridis6.4424.7987.9358forward
CNT30372941Brassica oleraceaArabidopsis thaliana21.8920.6194.92197forward
CNT30709815Brassica oleraceaGlycine max13.2225.6582.35119forward
CNT30290454Brassica oleraceaTriticum aestivum8.2234.2687.8474forward
CNT30313622Brassica oleraceaCamelina sativa21.8932.0393.91197forward
CNT30263549Brassica oleraceaBrassica rapa3069.2385.19270forward
CNT30611239Brassica oleraceaArabis alpina20.7887.7990.37187forward
CNT30610345Brassica oleraceaGossypium raimondii16.6758.5983.33150forward
CNT30680882Brassica oleraceaTriticum urartu8.2221.5787.8474forward
CNT30727018Brassica oleraceaLupinus angustifolius17.5623.4880.38158forward

Expression of CNT30236483

Peptides detected in this lncRNA

>peptide 1 (98 aa)
MDFLSVGVTMTLRLLVASKLSSYLRTCPGYSTSLLGFHLAGTCTWNPSPLYGGIGRRHFGTNGGGADEECEGETARDGGIIVFMRLLSFTHYLDGFGE*

>peptide 2 (68 aa)
MKKKESRALFCLCCFDSSNTERSGCFLDKFVGSLEPPLVSSLCFADVKLASVHGKRPERGTLQESRNQ*

>peptide 3 (33 aa)
MAASAGDTLEPTAAAPTRSVRARRRETAGLSSS*

>peptide 4 (33 aa)
MRRKMMIERRRRPVRSDVGNTRCTPSSVSVSLA*

Sequence

>CNT30236483
TTTTGTGAGTGATGATAACTATGAAGATTATATTATTATATGTTTCATTTGATGATTGATTATACAAATGAATCTACCAAATTCAATTTTTTTGATCAAG
CATATAAAGCTAGTCTATAGCAAAGATATAGCATCATCATCATCTTGATAGTTTCTCAAAAGCTTAGTTTCATTTTCCATTTTTTTACAAGAGACAAATG
AAAAAAAAAGAAAGCAGAGCATTGTTCTGTTTGTGTTGCTTTGATTCAAGCAACACTGAAAGAAGTGGCTGCTTTCTCGACAAATTTGTTGGCTCCCTTG
AACCACCTCTTGTCTCCAGCTTGTGCTTTGCAGATGTAAAGCTTGCCTCCGTTCACGGAAAGAGACCTGAGAGAGGAACTCTTCAGGAGAGCCGTAATCA
GTGATGGACTTCTTGTCGGTAGGAGTGACCATGACATTGAGATTGCTAGTAGCATCAAAGTTGTCTTCGTACCTAAGGACTTGTCCTGGATACTCTACCT
CTCTGCTTGGGTTCCATTTAGCTGGAACCTGCACTTGGAATCCATCTCCATTGTATGGCGGCATCGGCAGGAGACACTTTGGAACCAACGGCGGCGGCGC
CGACGAGGAGTGTGAGGGCGAGACGGCGAGAGACGGCGGGATTATCGTCTTCATGAGACTGTTGAGCTTTACACACTACCTGGACGGGTTTGGAGAGTGA
AACGTAGCGCTGGGATGAGGAGGAAGATGATGATCGAGCGGCGGAGGAGGCCAGTGCGCTCTGATGTAGGAAACACGCGCTGTACGCCATCTTCTGTCTC
TGTCTCTCTCGCCTAAGCTCTGGCTGGCTGAGTTGCGATGAAAGTGGTTTTTGAGGATTGTCGAGTGTGATAATGCATCAAAAGTGAAGATGATTGGTTG