Detailed information on CNT30313622


BLAST search results

BLAST vs Swiss-Prot:
sp|Q42029|PSBP1_ARATH, E-value = 2e-52

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30372941Camelina sativaArabidopsis thaliana55.9335.9890.7344forward
CNT30631059Camelina sativaVigna unguiculata30.0850.2781.62185forward
CNT30712300Camelina sativaGlycine max21.6316.3883.46133forward
CNT30180672Camelina sativaSecale cereale8.4621.490.3852forward
CNT30561726Camelina sativaActinidia chinensis19.0223.8883.76117forward
CNT30236483Camelina sativaBrassica oleracea32.0321.8993.91197forward
CNT30263549Camelina sativaBrassica rapa19.6731.0391.74121forward
CNT30611239Camelina sativaArabis alpina14.842.7292.3191forward
CNT30610345Camelina sativaGossypium raimondii24.3958.5986150forward
CNT30624588Camelina sativaDaucus carota21.7966.3482.09134forward
CNT30727018Camelina sativaLupinus angustifolius28.2925.8582.76174forward

Expression of CNT30313622

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MTIGSLPQRQSHRSKLVSLGVKQRPERGTLQENRSQ*

>peptide 2 (59 aa)
MDFLSVGVTMTLRLLVASKLSSYLRTCPGYSISLLGFHFAGTCTLNPSPLYGMKSVFGE*

>peptide 3 (35 aa)
MRRKMMIVRLRKPMRSGVGNTHCTPFSLCVCLSLSL

Sequence

>CNT30313622
ATAATCTCACTCCATCTAAGATTATAGGCAAAACAATGTTGATACGTTGATTTAGGTAGAGTTTATAACTCCCTCTTTGATAGTTTTTTGTGCATAAGAG
AATATAATCTTGCTTATCAGACTCATCCAAACCTAGAGATTATCAGTTAGTTTGATTCTCTTATTCTACTCTATCAGCTTCAAGTTTACATTAACAAAAG
ACAATGACAATTGGAAGTTTACCTCAGAGGCAGTCTCACCGAAGTAAGCTTGTTTCCCTAGGAGTAAAACAAAGACCTGAGAGAGGAACTCTTCAGGAGA
ACCGTAGTCAGTGATGGACTTCTTGTCGGTAGGAGTGACCATGACATTGAGATTGCTGGTGGCATCGAAGTTGTCTTCGTACCTAAGGACTTGTCCTGGA
TACTCAATCTCTTTGCTAGGGTTCCATTTTGCTGGCACCTGCACTTTGAATCCATCTCCATTGTATGGCATGAAGTCTGTGTTTGGAGAGTGACACGTGA
CGCTGGGATGAGGAGGAAGATGATGATCGTGCGGCTGAGGAAGCCAATGCGCTCTGGTGTAGGAAACACGCACTGTACGCCATTCTCTCTCTGTGTATGT
CTCTCTCTTTCTCTC