Detailed information on CNT30263549


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30372941Brassica rapaArabidopsis thaliana30.5112.4593.28119forward
CNT30709770Brassica rapaGlycine max28.975.882.3113forward
CNT30236483Brassica rapaBrassica oleracea69.233085.19270forward
CNT30313622Brassica rapaCamelina sativa31.0319.6791.74121forward
CNT30611239Brassica rapaArabis alpina48.7289.281.05190forward
CNT30610345Brassica rapaGossypium raimondii28.2142.9782.73110forward

Expression of CNT30263549

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MMRKVMILRRRRRLVRSDVGNTRCTPSSMSLSVS*

>peptide 2 (57 aa)
LLVGRSDHDIEIASSVKVVFVPKDLSWILYLSAWVPLSWQHRRGTLWNQRQRRRRGV*

>peptide 3 (79 aa)
DFLSVGVTMTLRLLVASKLSSYLRTCPGYSTSLLGFHLAGSIGGGHFGTNGSGADEECESETARDGGGIVFLSLLCFAD*

Sequence

>CNT30263549
GACTTCTTGTCGGTAGGAGTGACCATGACATTGAGATTGCTAGTAGCGTCAAAGTTGTCTTCGTACCTAAGGACTTGTCCTGGATACTCTACCTCTCTGC
TTGGGTTCCACTTAGCTGGCAGCATCGGCGGGGGACACTTTGGAACCAACGGCAGCGGCGCCGACGAGGAGTGTGAGAGCGAGACGGCGAGAGACGGTGG
AGGTATCGTCTTCTTGAGTCTGTTGTGCTTTGCAGACTAGTTTAGAGAGTGACACGTAGCGCTGGGATGATGAGGAAGGTGATGATCTTGCGACGGAGGA
GGAGGCTAGTGCGCTCTGATGTAGGAAACACGCGCTGTACGCCATCTTCTATGTCTCTCTCTGTCTCTTAAGCTCTGTGTTTGGTTGAAG