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Detailed information on CNT3022022


BLAST search results

BLAST vs Swiss-Prot:
sp|P27489|CB23_SOLLC, E-value = 2e-66

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30639243Populus trichocarpaNymphaea colorata37.8618.3788.44173forward
CNT30516186Populus trichocarpaJuglans regia19.4722.8892.1389forward
CNT30728364Populus trichocarpaCorchorus capsularis41.7927.3683.25191forward
CNT30381107Populus trichocarpaManihot esculenta47.736.0988.53218forward
CNT30526626Populus trichocarpaPhaseolus vulgaris39.1751.4482.68179forward
CNT30630022Populus trichocarpaVigna unguiculata27.3543.485.6125forward
CNT30710645Populus trichocarpaGlycine max61.7146.3884.4282forward
CNT30156649Populus trichocarpaPistacia vera58.2117.2884.96266forward
CNT30564423Populus trichocarpaActinidia chinensis65.2147.384.23298forward
CNT30238350Populus trichocarpaBrassica oleracea46.8320.7684.11214forward
CNT30510187Populus trichocarpaSolanum lycopersicum40.721.0984.95186forward
CNT3062296Populus trichocarpaArabidopsis lyrata43.1142.3783.76197forward
CNT30207651Populus trichocarpaHelianthus annuus37.6414.9386.05172forward
CNT30480204Populus trichocarpaArabidopsis halleri34.5743.6582.28158forward
CNT30620568Populus trichocarpaCajanus cajan49.6732.2484.58227forward
CNT30359477Populus trichocarpaLactuca sativa55.5842.4781.5254forward
CNT30645477Populus trichocarpaCannabis sativa44.4253.2884.24203forward
CNT3058205Populus trichocarpaAmborella trichopoda36.5424.3885.63167forward
CNT3035078Populus trichocarpaCucumis melo36.5417.5183.23167forward
CNT30726943Populus trichocarpaLupinus angustifolius58.8642.8383.64269forward

Expression of CNT3022022

Peptides detected in this lncRNA

>peptide 1 (46 aa)
MRNPSTRPQDQLINQQCPIHSHLGILQSGMKESELKMVPSTSPCQVH

>peptide 2 (36 aa)
MENMASRPFLISFTLSSANVAGSSARPRGSKYWPPG*

Sequence

>CNT3022022
GCAAGGTCTTTCCATTCTAATCCAAGAAATTAAATGTTAATTTATGACCCAGGCACAAACTTGGTGGCGTAGACCCAAGCGTTGTTAGCAACAGGGTTGT
CCAGGTGGTCCAAGAGATTCTCCAGGGGACCTTTTCCAGTAACAATAGCCTGAACAAAGAATCCAAACATGGAGAACATGGCTAGCCGTCCATTCTTGAT
TTCCTTCACCTTGAGCTCGGCGAATGTAGCTGGATCATCGGCCAGGCCGAGAGGGTCGAAGTATTGGCCACCAGGGTAAAGGTCATTACCCTCTCCTACT
CCGGGGAGACCATTGATGCGGAATCCCTCAACAAGGCCTCAGGATCAGCTGATAAACCAGCAGTGTCCCATCCATAGTCACCTGGGAATTCTCCAGTCAG
GTATGAAGGAGTCTGAGCTGAAAATGGTCCCAAGTACTTCACCCTGTCAGGTCCATA