« Back to Actinidia chinensis search


Detailed information on CNT30564423


BLAST search results

BLAST vs Swiss-Prot:
sp|P27489|CB23_SOLLC, E-value = 9e-113

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30639243Actinidia chinensisNymphaea colorata36.5124.4288.26230forward
CNT30381130Actinidia chinensisManihot esculenta26.5149.1288.02167forward
CNT30710645Actinidia chinensisGlycine max52.8654.7784.68333forward
CNT30156649Actinidia chinensisPistacia vera40.9516.7686.05258forward
CNT30238350Actinidia chinensisBrassica oleracea54.1333.0780.65341forward
CNT30243592Actinidia chinensisAvena sativa52.2242.5682.07329forward
CNT30207651Actinidia chinensisHelianthus annuus55.5630.3883.43350forward
CNT30359477Actinidia chinensisLactuca sativa42.8645.1583.33270forward
CNT3022022Actinidia chinensisPopulus trichocarpa47.365.2184.23298forward
CNT30726943Actinidia chinensisLupinus angustifolius53.6553.8284.62338forward

Expression of CNT30564423

Peptides detected in this lncRNA

>peptide 1 (34 aa)
SNKSENYNHIQYTESRLELHNTITREMEVIMGSL*

>peptide 2 (44 aa)
MAWTKNPNIENMASLPFLISFTLSSAKVTGSSARPSGSKYCPPG*

Sequence

>CNT30564423
GATCCAACAAAAGTGAAAATTATAACCATATACAATATACAGAATCTCGTCTCGAATTACACAACACAATAACGAGAGAAATGGAAGTTATAATGGGGAG
TTTATGATCCAGGCACAAACTTGGTGGCATAGACCCAGGCATTGTTAGCCACAGGGTTGTCAAGGTGGTCCAAGAGGTTCTCAAGTGGGCCCTTGCCAGT
GACAATGGCTTGGACAAAGAACCCGAACATCGAGAACATGGCTAGCCTACCATTCTTGATCTCCTTCACCTTGAGCTCAGCAAAGGTAACCGGGTCATCT
GCAAGACCTAGTGGGTCAAAGTATTGTCCACCGGGGTAGAGGTCGTTACCCTCTCCAACCCCGGGAATGCCGTTGATGCGGTAACCCTCAACGAGGCCCA
TTAGGACGACTTGGAAGCCTAGCACAGCCAAAATGCTCTGGGCATGGACCAAGTTGGGGGCCCTGTTCCTGGCAAAAGCCTCGGGATCAGCAGATAAACC
AGCAGTGTCCCATCCATAATCACCAGGAAATTCTCCATTCAGATACGACGGAGTTTGAGCCGAAAAGGGTCCCAAGTACTTCACTCTGTCCGGTCCGTAC
CATAATTCATTGCTCTAACCAAAACCACAA