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Detailed information on CNT30148203


BLAST search results

BLAST vs Swiss-Prot:
sp|P27523|CB23_HORVU, E-value = 1e-116

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671892Brachypodium distachyonSetaria viridis57.2972.3887.57338forward
CNT30520579Brachypodium distachyonSetaria italica72.5440.4588.79428forward
CNT30728364Brachypodium distachyonCorchorus capsularis57.848.8581.23341forward
CNT30156649Brachypodium distachyonPistacia vera69.4926.6480.73410forward
CNT30243592Brachypodium distachyonAvena sativa77.6359.2587.12458forward
CNT3013298Brachypodium distachyonZea mays73.2250.0689.12432forward
CNT3067083Brachypodium distachyonLeersia perrieri27.6343.2487.73163forward
CNT30362471Brachypodium distachyonSorghum bicolor36.2748.4287.38214forward
CNT30359477Brachypodium distachyonLactuca sativa67.4666.5681.91398forward
CNT3035078Brachypodium distachyonCucumis melo54.4133.6581.93321forward
CNT30496441Brachypodium distachyonDigitaria exilis78.3156.8385.93462forward
CNT30556551Brachypodium distachyonPanicum hallii54.7554.7588.54323forward

Expression of CNT30148203

Peptides detected in this lncRNA

>peptide 1 (65 aa)
HRPFFAICTHGTFIHTEKSSLQWRTRRRAVPGPKTQARTWWRKPRRCWRRGHQGGRRGSPRAPSR*

>peptide 2 (99 aa)
IDHSLQFARMVRLYTQRRVVYNGGPGAVPCQGLRPRRELGGENPGVVGDGVIKVVEEVLQGPLPGNDGLHEEPEHGEHGEPAVLDLLHLELSKSDRVIG*

>peptide 3 (31 aa)
MRNPSTRPMRSTCEPRTARMLCAWTRLGFPR*

>peptide 4 (44 aa)
MACTKNPNMENMASRPFLISFTLSSAKVTGSSASPNGSKYCPPG*

Sequence

>CNT30148203
CATCGACCATTCTTTGCAATTTGCACGCATGGTACGTTTATACACACAGAGAAGAGTAGTTTACAATGGCGGACCAGGCGCCGTGCCGTGCCAGGGCCTA
AGACCCAGGCGCGAACTTGGTGGCGAAAACCCAGGCGTTGTTGGCGACGGGGTCATCAAGGTGGTCGAAGAGGTTCTCCAAGGGCCCCTTCCCGGTAACG
ATGGCCTGCACGAAGAACCCGAACATGGAGAACATGGCGAGCCGGCCGTTCTTGATCTCCTTCACCTTGAGCTCAGCAAAAGTGACAGGGTCATCGGCTA
GTCCCAACGGGTCGAAATACTGCCCGCCCGGGTAAAGGTCGTTGCCTTCCCCGACGCCGTCGAGCCCGTTGATGCGGAACCCTTCGACGAGGCCCATGAG
GAGCACCTGCGAGCCGAGGACCGCCAGGATGCTCTGCGCGTGGACCAGGTTGGGGTTTCCCAGGTAGTCGAGCCCGCCCTCGGAGAAGATCTGGGCGCCC
GCCTTGAACCACACGGGCTCCTTGAACTCCACGCCCACCCACTTCTGGAGCACCTCCGGGAACACGCAGCCGAGGGCGCCGAGCATCGCC