Detailed information on CNT30710645


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9S7M0|CB3_ARATH, E-value = 4e-88

BLAST vs NONCODE:
NONBNAT003428, E-value = 3e-54

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30728364Glycine maxCorchorus capsularis45.5639.6883.75277forward
CNT30156649Glycine maxPistacia vera59.0523.3382.73359forward
CNT30564423Glycine maxActinidia chinensis54.7752.8684.68333forward
CNT30238350Glycine maxBrassica oleracea53.9531.8182.62328forward
CNT30243592Glycine maxAvena sativa54.9343.2183.53334forward
CNT3062573Glycine maxArabidopsis lyrata59.8762.8781.87364forward
CNT30207651Glycine maxHelianthus annuus62.9933.2583.81383forward
CNT30362471Glycine maxSorghum bicolor30.4341.8682.16185forward
CNT30359477Glycine maxLactuca sativa58.0659.0382.44353forward
CNT3022022Glycine maxPopulus trichocarpa46.3861.7184.4282forward
CNT3035078Glycine maxCucumis melo38.3224.4283.26233forward
CNT30726943Glycine maxLupinus angustifolius62.6660.6786.09381forward

Expression of CNT30710645

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MANLPFLISLTLSSAKVTGSSARPSGSKYWPPG*

>peptide 2 (31 aa)
MRYPSTRPIRITWKPSTARMLCAWTRFGFPK*

Sequence

>CNT30710645
AATCCAACAATTATTGTGATCATATAATCTACACATAAATCACAAAGGTAAGCACGAGGGATGGGATCATAGGGATTAGGGAAGAAGAAGTCATATACAT
TTTAAGACCCTGGGGAAAACTTAGTGGCATAGACCCAAGCATTGTTGGCCACAGGGTTGTCTAGGTGGTCCAAAAGGTTCTCCAATGGACCTTTTCCAGT
GACAATAGCTTGAACAAAGAATCCAAACATAGAGAACATGGCCAACCTTCCATTCTTGATCTCCTTGACTTTGAGCTCAGCAAAAGTGACTGGGTCATCA
GCTAGGCCCAGTGGGTCAAAGTACTGGCCCCCAGGGTAGAGGTCATTGCCCTCTCCCACCCCATCAAGCCCATTGATGCGGTACCCTTCAACAAGGCCCA
TTAGGATAACTTGGAAGCCCAGCACTGCCAGGATGCTTTGTGCATGGACAAGGTTTGGGTTTCCCAAATAGTCAAGCCCACCTTCGGAGAATATTTGGGA
AAGGAGTTGCTTTAAGAGTACCAGAACTTGTTGTTGCTGCCATCAATGTTGCTGCCATGACTTCCAACTTCCTAGGTTTGAAACCTTAAGTTACTTGAAA
AATAGAAG