Detailed information on CNT30368762


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30303822Sorghum bicolorTriticum aestivum46.1442.7582.4233forward
CNT30397679Sorghum bicolorTriticum turgidum12.8723.3893.8565forward
CNT30540204Sorghum bicolorBrassica napus22.9720.981.9116forward
CNT30233604Sorghum bicolorBrassica oleracea22.9717.6682.76116forward
CNT30441596Sorghum bicolorAegilops tauschii46.1431.6682.4233forward
CNT3082028Sorghum bicolorBrassica juncea2013.1382.18101forward
CNT30217954Sorghum bicolorKalanchoe fedtschenkoi17.0323.8984.8886forward
CNT30718929Sorghum bicolorMalus domestica golden22.9712.581.03116forward
CNT30340471Sorghum bicolorEragrostis tef46.1429.8390.56233forward
CNT30359331Sorghum bicolorLactuca sativa39.0122.8581.73197forward
CNT30573352Sorghum bicolorVitis vinifera39.630.6779200forward
CNT30583519Sorghum bicolorEchinochloa crusgalli44.3687.592.41224forward
CNT30557526Sorghum bicolorPanicum hallii34.6519.1994.29175forward

Expression of CNT30368762

Peptides detected in this lncRNA

>peptide 1 (69 aa)
MMQQPTDVLVELEAGEHVVVDGVPAGGITPVLNHGSAVSGGMMPSFPKTSGAMAPAAPSIAKRPLITSP*

>peptide 2 (35 aa)
MSPDATLQAPFHASAKPEHMNNRYDAATNGRSSGT*

Sequence

>CNT30368762
AAGATCAATTTTTCAGCGTCTAGGGAGGGAATTGTACATTGATTTACCATGTGCAATATAGTTTGTGGTCTCAACAAGATCAATACTAATTTGTTACAAG
CAGCAGCAGGCTGGCCATGAGTCCTGATGCAACGCTTCAGGCTCCTTTCCATGCATCAGCCAAGCCAGAGCATATGAACAACAGGTATGATGCAGCAACC
AACGGACGTTCTAGTGGAACTTGAGGCTGGTGAGCACGTTGTTGTTGACGGGGTGCCCGCCGGCGGGATCACCCCCGTCTTGAACCACGGCAGCGCCGTC
TCCGGCGGGATGATGCCCAGCTTCCCGAAGACCTCCGGGGCGATGGCGCCCGCCGCTCCCAGCATCGCGAAGCGCCCGTTGATCACCTCGCCGTAGGCCA
GCCACTTGGGCTCGATGAAGCCGCCGGTGCCCTCCGGGTCCGAGAGCCCCAGCGGGTCGAATCCATAGTCGCCGGGCAGCCTGCAGCAATGACGCCGGTG
AGCAT