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Detailed information on CNT30340471

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30217954	Eragrostis tef	Kalanchoe fedtschenkoi	12.93	28.06	85.15	101	forward
CNT30210187	Eragrostis tef	Helianthus annuus	26.76	25.55	78.95	209	forward
CNT30368762	Eragrostis tef	Sorghum bicolor	29.83	46.14	90.56	233	forward
CNT30359331	Eragrostis tef	Lactuca sativa	30.99	28.07	80.58	242	forward

Expression of CNT30340471

Peptides detected in this lncRNA

>peptide 1 (89 aa)
MLRRSNTGEEELYINLPCAIQYPVSTRRSIVIMLQAAGWRCMNRDAVPQTLHHHQPARTNTHISSLNCTDGQQLATQRARKKGSTAQSF*

>peptide 2 (72 aa)
MTPVLNHGSAVSAGIRPSLPNTSGAMAPAAPSIAKRPLITSPYASHLGSMKPPVPSGSDRPNGSKPKSPGSLQ

>peptide 3 (29 aa)
MQCLKRFTIISQREPTHTSRRSIAPTGSS*

Sequence

>CNT30340471
GTCGAAGTAATTGTTCGCAATGTTGAGACGTAGTAACACGGGGGAGGAGGAATTGTACATTAATTTACCATGTGCAATACAATATCCGGTCTCAACAAGA
CGATCAATTGTTATAATGTTACAGGCAGCAGGCTGGCGATGCATGAATCGTGATGCAGTGCCTCAAACGCTTCACCATCATCAGCCAGCGCGAACCAACA
CACACATCTCGTCGCTCAATTGCACCGACGGGCAGCAGCTAGCAACGCAACGGGCTAGAAAGAAAGGCAGTACAGCGCAATCTTTCTAGTGGAACTTGAG
GCTGGTGAGCACGTTGTTGTTGACAGGGTCGGCGAGGTGGTCGAGCAGGTTCTGCCTGCCGTTCTTGATCTCCTTGAGCTTGAGCTCCTTGAGCGACTTC
TCGTCCTTGCCGAATCCGAGCGGGTTGAAGATCGGGCCGCCGGGGTAGGCCGGGTCGCCGGAGCCGCCGAGGAACTTCTCGAGGCCGAGGAAGTACTGCT
TGCCCATGGACCCCGGAGCGTGTAGGGGTCGGCCCAGTAGTTGTAAGTGCCGGCCGGCGGGATGACGCCCGTCTTGAACCACGGCAGCGCCGTCTCCGCC
GGGATCAGGCCCAGCTTGCCGAACACCTCCGGCGCGATGGCGCCCGCCGCGCCAAGCATCGCGAAACGCCCGTTGATCACCTCCCCGTACGCCAGCCACT
TGGGCTCGATGAAACCGCCGGTGCCCTCTGGGTCCGACAGGCCCAACGGGTCGAAGCCGAAGTCGCCGGGCAGCCTGCAAC