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Detailed information on CNT30557526


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SY97|LHCA3_ARATH, E-value = 1e-91

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30303678Panicum halliiTriticum aestivum27.7437.9988.93253forward
CNT30441596Panicum halliiAegilops tauschii50.1162.0985.12457forward
CNT30474763Panicum halliiSaccharum spontaneum52.1954.4697.27476forward
CNT30140296Panicum halliiLolium perenne49.6746.784.55453forward
CNT30210187Panicum halliiHelianthus annuus19.9622.2581.87182forward
CNT30340478Panicum halliiEragrostis tef47.2651.0191.65431forward
CNT30368762Panicum halliiSorghum bicolor19.1934.6594.29175forward
CNT30595666Panicum halliiOryza meridionalis41.1230.188.27375forward
CNT30359331Panicum halliiLactuca sativa19.9621.1182.97182forward
CNT30118713Panicum halliiCitrus clementina26.2139.778.24239forward
CNT30583144Panicum halliiEchinochloa crusgalli51.3240.7395.73468forward

Expression of CNT30557526

Peptides detected in this lncRNA

>peptide 1 (42 aa)
MTPVLNHGSAVSAGMMPSLPKISGAMAPAAPSMAKRPLITSP*

>peptide 2 (48 aa)
MKPPSPGSLRRHAASSFRSDQRFRMHQSSSILIQELARSCRYTYVPSR*

>peptide 3 (36 aa)
MASMASLPFLISLSLSSFISFSVLPKPSGLKSGPPG*

>peptide 4 (37 aa)
VVAHHIYNINTRVDRNCTFDLPSCAIQFLVSINRMNY*

>peptide 5 (34 aa)
SWLTIYTTLTLESIGIVHLIYHHAQYSFWSQLTG*

Sequence

>CNT30557526
GTCGTGGCTCACCATATATACAACATTAACACTAGAGTCGATCGGAATTGTACATTTGATTTACCATCATGCGCAATACAGTTTCTGGTCTCAATTAACA
GGATGAATTACTAATTTGTTACAAGCAGCGAGCAGCATATGAACACACATCGATCGATCACCTCTCGCCTCCCACTACAACAACAGGCGGCGGCACACCC
GTGATGCACCGCACGGTCTAGTGGAACTTGAGGCTGGTGAGCACGTTGTTGTTGACGGGCCCCTGGATGAAGTAGCCGAGGATGGCGAGCATGGCGAGCC
TGCCGTTCTTGATCTCCTTGAGCTTGAGCTCCTTCATCTCCTTCTCGGTCTTGCCGAAGCCGAGCGGGTTGAAGAGCGGGCCCCCGGGGTAGGAGGGGTC
GCCGGAGCCGGCGAGGAACTTCTCGAGGCCGAGGAAGTACTGCTTGCCCATGGAGCCCGGGTTGTACCAGTCCTGGAGGCGGCGGTGCTCGGCGAAGCCC
ATGAGCGCCATGTTGAAGACGAAGAGCGTGTAGGAGTCGGCCCAGTAGTTGTAGGTGCCCGCGGGAGGGATGACCCCCGTCTTGAACCACGGCAGCGCGG
TCTCCGCCGGGATGATGCCCAGCTTGCCGAAGATCTCCGGGGCGATGGCGCCCGCCGCGCCCAGCATGGCGAAGCGGCCGTTGATCACCTCGCCGTAGGC
CAGCCACTTGGGCTCGATGAAGCCGCCGTCGCCGGGCAGCCTGCGGCGGCACGCAGCATCCAGTTTCAGATCGGATCAGAGATTCAGAATGCATCAGTCA
TCATCGATATTAATTCAAGAGCTAGCTCGATCATGCCGGTACACGTACGTGCCATCGAGGTAGGAGAGGGACTGCTTGGACGCGAACCACAGCTGCCTGT
CGGCGCCTTGCT