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Detailed information on CNT30374311


BLAST search results

BLAST vs Swiss-Prot:
sp|P25818|TIP11_ARATH, E-value = 5e-49

BLAST vs NONCODE:
NONGMAT001209, E-value = 2e-18

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30310654Arabidopsis thalianaCamelina sativa67.5181.9391.61322forward
CNT30612524Arabidopsis thalianaArabis alpina53.4699.6183.14255forward

Expression of CNT30374311

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MSSSPPLVRKPRRDSWRLQRKLLQLRCWLQQ*

>peptide 2 (38 aa)
MSPAIPPPTRVVGPCPAHHRWSESHGGIHGGSRESSSS*

>peptide 3 (33 aa)
PLLKPTDKDSSKRSNDHKPLDDSKLHKRKLKRH*

>peptide 4 (38 aa)
MEAPEKAPPAKMLAPTMKPIAMGAIVPRLPFLGSMAVA*

Sequence

>CNT30374311
GGCCACTCTTGAAACCAACGGACAAGGATTCATCTAAAAGATCGAACGATCATAAACCCCTTGATGATTCGAAATTACACAAACGGAAATTAAAAAGACA
TTAAAATTCAAATTCAAAGTCGAATAAAATTACACAAGAGAGAAAAAGAGAGATTAATTCAGTAGTCTGTGGTTGGGAGCTGCTCGTGTGTGGTGTTGAT
GAAGAAAACTTCGTAGATGAGTCCAGCGATTCCACCGCCGACGAGAGTGGTTGGTCCATGTCCAGCTCACCACCGCTGGTCCGAAAGCCACGGCGGGATT
CATGGAGGCTCCAGAGAAAGCTCCTCCAGCTAAGATGTTGGCTCCAACAATGAAACCGATTGCGATGGGAGCAATTGTTCCAAGACTCCCGTTTTTGGGG
TCAATGGCTGTAGCGTAGACGGTGTAAACAAGCCCGAATGTCATCACGATCTCGAAAACGAAAGCGTTCAACACTCC