Detailed information on CNT30547910


BLAST search results

BLAST vs Swiss-Prot:
sp|O64964|TIP11_MAIZE, E-value = 8e-80

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30374015Ipomoea trilobaArabidopsis thaliana19.1926.2883.74123forward
CNT30727222Ipomoea trilobaCorchorus capsularis17.4721.1783.93112forward
CNT30712551Ipomoea trilobaGlycine max23.8739.7486.93153forward
CNT30635699Ipomoea trilobaCapsicum annuum22.626.5585.52145forward
CNT30662885Ipomoea trilobaTriticum dicoccoides11.2331.5887.572forward
CNT30310654Ipomoea trilobaCamelina sativa18.7230.5385120forward
CNT3066802Ipomoea trilobaLeersia perrieri19.3452.3281.45124forward
CNT30623609Ipomoea trilobaDaucus carota19.522.2484.8125forward
CNT30322744Ipomoea trilobaAsparagus officinalis11.0821.0190.1471forward

Expression of CNT30547910

Peptides detected in this lncRNA

>peptide 1 (69 aa)
RMLAPTMKPMAIGAMVPRSPFFGSTAVAYTVYTSPKVITISKIRALHTDTPDRPKAPVDCIHVNNWSDR*

>peptide 2 (42 aa)
NVGSNNETNGDWCNGSQISLLWVHGGGIYGVHQPEGHHNLED*

>peptide 3 (82 aa)
MLAPTETATKRAKAWAMAAAIRPEGVLGPSLVNLEKAMPEPWPANTKMRVHMNSARAAFRLPGCRSSSWLPNAIWWIGMVGKS

Sequence

>CNT30547910
AGAATGTTGGCTCCAACAATGAAACCAATGGCGATTGGTGCAATGGTTCCCAGATCTCCCTTCTTTGGGTCCACGGCGGTGGCATATACGGTGTACACCA
GCCCGAAGGTCATCACAATCTCGAAGATTAGAGCGCTCCATACTGACACTCCGGACAGACCAAAAGCCCCAGTTGACTGCATTCACGTTAATAATTGGTC
AGACCGTTGACTTGGGTCTGCTCAAAATTCCTCGTGACTTGACAATATATAGGGAATTTGAGTGAAGCTTACCATGCCGCCGGTGGCGAACTCGAGGAGG
AAGCAGGCGGCGGTGGAGCCAAGAAGCTGAGCGATGACGTAGAGGACGCCGCGGAAGAAGGTGACGGCGGGGTTGACGTGGCCACCGGAGATGTTGGCTC
CGACGGAAACAGCCACGAAGAGAGCGAAGGCGTGGGCAATGGCGGCGGCGATAAGGCCGGAGGGGGTGCTAGGGCCGTCGTTAGTCAACTTGGAGAAGGC
CATGCCTGAGCCCTGGCCGGCGAACACGAAAATGAGGGTGCATATGAACTCCGCCAGGGCCGCCTTCAGGTTGCCCGGCTGCCGGAGCTCCTCGTGGCTC
CCGAACGCGATTTGGTGGATCGGCATGGTCGGAAAATCAAG