Detailed information on CNT30612524


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30698182Arabis alpinaQuercus lobata39.8416.2984.31102forward
CNT30374311Arabis alpinaArabidopsis thaliana99.6153.4683.14255forward
CNT30727223Arabis alpinaCorchorus capsularis35.946.5684.7892forward
CNT30503973Arabis alpinaNicotiana attenuata32.8112.383.3384forward
CNT30167253Arabis alpinaPistacia vera33.5917.784.8886forward
CNT30239005Arabis alpinaBrassica oleracea69.1417.7280.79177forward
CNT30146734Arabis alpinaMedicago truncatula44.5318.4582.46114forward
CNT30310654Arabis alpinaCamelina sativa69.5345.2986.52178forward
CNT30423736Arabis alpinaPapaver somniferum33.5910.5187.2186forward
CNT3050792Arabis alpinaCucumis sativus66.4117.0382.35170forward

Expression of CNT30612524

Peptides detected in this lncRNA

>peptide 1 (84 aa)
ELFVGGVDEEELVDESGESTSHECPIPAHNCWSKSHGRVHGCSTESSSSQNVGSNYETDCNRSNCSKTPGFRIHRGGVDRVNQPE

>peptide 2 (64 aa)
MSPASPPPTSVQSQLTTAGPKATAGFMDAPLKAPPAKMLAPTMKPIAIGAIVPRLPALGSTAVA*

Sequence

>CNT30612524
GAGTTGTTCGTGGGTGGTGTTGATGAAGAAGAGCTCGTAGATGAGTCCGGCGAGTCCACCTCCCACGAGTGTCCAATCCCAGCTCACAACTGCTGGTCCA
AAAGCCACGGCAGGGTTCATGGATGCTCCACTGAAAGCTCCTCCAGCCAAAATGTTGGCTCCAACTATGAAACCGATTGCAATAGGAGCAATTGTTCCAA
GACTCCCGGCTTTAGGATCCACCGCGGTGGCGTAGACCGTGTAAACCAGCCCGAAC