CANTATAdb - search

Detailed information on CNT30113856

BLAST search results

BLAST vs Swiss-Prot:
sp|P25818|TIP11_ARATH, E-value = 3e-70

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30382128	Ficus carica	Manihot esculenta	8.86	22.82	86.52	89	forward
CNT30712600	Ficus carica	Glycine max	19.52	26.27	90.82	196	forward
CNT30146554	Ficus carica	Medicago truncatula	14.74	39.89	82.43	148	forward
CNT30247019	Ficus carica	Avena sativa	21.12	17.25	86.79	212	forward
CNT30310654	Ficus carica	Camelina sativa	13.75	35.11	83.33	138	forward
CNT30570838	Ficus carica	Vitis vinifera	11.85	28.27	85.71	119	forward
CNT30706772	Ficus carica	Prunus avium	18.23	52.14	90.71	183	forward

Expression of CNT30113856

Peptides detected in this lncRNA

>peptide 1 (61 aa)
MSPIERPTSQDVGSNNETNRDGGDNSQIALLRVNGCGVHRVDQSEGQHDLQNDSVPDTNSG*

>peptide 2 (65 aa)
MPRRRVMLPPTKAPKVTAGLTCPPEMLAATATATKRAKPWAMAAEMRPEGVVEMNSANAALRASG*

>peptide 3 (30 aa)
MLAPTMKPIAMGAIIPKLPFFGSMAVAYTV*

>peptide 4 (50 aa)
MMAFFFFFLTIYYYFSVVCGWELLVGVGDEEELVDEPHRTAHQSRCWLQQ*

Sequence

>CNT30113856
CCTAGCTTCCAATAGAAATCACACACAAATTCATTGATCCAGGGAAAAACTACAACATGGTGGGGATCATGATCGTGATTAATTGATGAAAAGATCAACG
GTGCAGATTAAACAACAAAAGAAACTCCCGGGAAGCAAATAAATACACCAAAGTTGGAAATCAAAAGCCGTAGGAGAAACGGTGCGTTTTAATGATGGCT
TTCTTTTTCTTTTTTCTAACAATTTATTATTATTTTTCAGTAGTCTGTGGTTGGGAGCTGCTCGTGGGTGTGGGAGATGAAGAAGAACTCGTAGATGAGC
CCCATCGAACGGCCCACCAGTCAAGATGTTGGCTCCAACAATGAAACCAATCGCGATGGGGGCGATAATTCCCAAATTGCCCTTCTTCGGGTCAATGGCT
GTGGCGTACACCGTGTAGACCAGTCCGAAGGTCAGCACGATCTCCAAAACGACAGCGTTCCAGACACCAATTCCGGTTAGACCGAAAGCTGGAATAGCCT
GCGAAGCACCGAAATAAAACCCATCCAAAAAAGGAAAAAGTTAGTTTAGGCCGTTAATAACGTAACTGTATTGAAACTAACTTTGGTGGAAATGATAAAC
TCACCAAGCCGCCGGTGGAGAACTTGAGGAGGAGGACGGCGACGGTGGAGCCGAGGAGCTGGGCGATCCAGTAGAGGATGCCGCGGAGGAGGGTGATGTT
GCCGCCGACGAAGGCGCCAAAGGTGACGGCGGGGTTGACGTGTCCGCCGGAGATGTTGGCGGCGACGGCGACGGCCACGAAGAGGGCGAAGCCGTGGGCG
ATGGCGGCGGAAATGAGGCCGGAGGGGGTGGTGGAGATGAACTCGGCCAACGCCGCCTTGAGAGCGTCGGGGTGAGTCGCCTCCTCCCGACCACCGATGG
CGATGTTTCGGATCGGCATATTTTTAATGATTTAAGTAATGACGAACGGAAAGTGATTTCGTTTCTCACCGCCGAGAAGGTGGAGAGTTTAGCTAGTAGC
ACTA