Detailed information on CNT3030395


BLAST search results

BLAST vs Swiss-Prot:
sp|P29684|RBS_HEVBR, E-value = 5e-19

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30317080Theobroma cacaoCorylus avellana45.230.2985.84113forward
CNT3069740Theobroma cacaoQuercus suber40.411.1584.16101forward
CNT30525342Theobroma cacaoPhaseolus vulgaris245.899060forward
CNT30166270Theobroma cacaoPistacia vera41.215.8285.44103forward
CNT30235903Theobroma cacaoBrassica oleracea23.225.4487.9358forward
CNT30605275Theobroma cacaoGossypium raimondii46.838.6188.03117forward
CNT30153087Theobroma cacaoPrunus persica2830.0485.7170forward
CNT30573765Theobroma cacaoVitis vinifera38.413.9582.2996forward
CNT3026569Theobroma cacaoPopulus trichocarpa40.826.784.31102forward

Expression of CNT3030395

Peptides detected in this lncRNA

>peptide 1 (71 aa)
SNSNSKHGTHLLRRRYSTSLNNLSRVRSGRAEVDLRPVNGATMLACAGEARLTVATVADEIIEEAIADATY*

>peptide 2 (59 aa)
LQFEFQARNPLIAKKVFYFLKQPLSSEIRESRGRLEAGEWGDHAGLCRGGTVNGGDGCR*

Sequence

>CNT3030395
CTCCAATTCGAATTCCAAGCACGGAACCCACTTATTGCGAAGAAGGTATTCTACTTCCTTAAACAACCTCTCTCGAGTGAGATCAGGGAGAGCAGAGGTA
GACTTGAGGCCGGTGAATGGGGCGACCATGCTGGCCTGTGCCGGGGAGGCACGGTTAACGGTGGCGACGGTTGCCGATGAGATCATTGAGGAAGCCATTG
CTGATGCTACTTACTAGTGTATATGCTAGAGTTACGAAATTCTCACTCCC