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Detailed information on CNT30620550


BLAST search results

BLAST vs Swiss-Prot:
sp|Q42823|RBS_GLYTA, E-value = 2e-45

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30317063Cajanus cajanCorylus avellana15.1931.4985.16182forward
CNT30514517Cajanus cajanJuglans regia17.4535.6782.78209forward
CNT30372132Cajanus cajanArabidopsis thaliana18.9535.1481.5227forward
CNT30279728Cajanus cajanChenopodium quinoa17.2827.9485.02207forward
CNT3020258Cajanus cajanCitrullus lanatus16.2827.6282.56195forward
CNT30727191Cajanus cajanCorchorus capsularis14.9420.0786.59179forward
CNT3069740Cajanus cajanQuercus suber18.3624.2884.55220forward
CNT30402284Cajanus cajanBeta vulgaris6.6836.539080forward
CNT30525466Cajanus cajanPhaseolus vulgaris19.5378.7986.32234forward
CNT30629734Cajanus cajanVigna unguiculata18.4524.885.97221forward
CNT30196843Cajanus cajanPisum sativum11.2728.3682.22135forward
CNT30710856Cajanus cajanGlycine max30.1335.1587.53361forward
CNT30166270Cajanus cajanPistacia vera18.2833.6482.65219forward
CNT30633374Cajanus cajanCapsicum annuum17.224.0182.04206forward
CNT3091655Cajanus cajanSolanum tuberosum15.2830.2583.06183forward
CNT30565205Cajanus cajanActinidia chinensis13.7720.480.61165forward
CNT3083932Cajanus cajanVigna radiata17.725.3685.38212forward
CNT30543822Cajanus cajanBrassica napus15.9465.8681.15191forward
CNT30235483Cajanus cajanBrassica oleracea15.9433.9380.63191forward
CNT30508846Cajanus cajanSolanum lycopersicum15.5339.0881.18186forward
CNT30146094Cajanus cajanMedicago truncatula8.7620.6386.67105forward
CNT30312471Cajanus cajanCamelina sativa15.6124.9781.82187forward
CNT3062074Cajanus cajanArabidopsis lyrata18.9521.1881.06227forward
CNT3075084Cajanus cajanBrassica juncea15.5321.4381.18186forward
CNT30261376Cajanus cajanBrassica rapa15.9447.7581.68191forward
CNT30613234Cajanus cajanArabis alpina10.9322.9882.44131forward
CNT30605276Cajanus cajanGossypium raimondii14.9445.3285.47179forward
CNT30648517Cajanus cajanRosa chinensis18.2842.9483.56219forward
CNT30623620Cajanus cajanDaucus carota17.738.6281.13212forward
CNT30479552Cajanus cajanArabidopsis halleri15.5332.482.26186forward
CNT30357026Cajanus cajanLactuca sativa17.9533.8184.65215forward
CNT30430736Cajanus cajanPapaver somniferum13.4420.6180.75161forward
CNT30573704Cajanus cajanVitis vinifera15.1923.381.32182forward
CNT3026569Cajanus cajanPopulus trichocarpa15.5348.6982.8186forward
CNT3038822Cajanus cajanCucumis melo17.4546.9786.12209forward
CNT30176025Cajanus cajanVigna angularis15.1128.2886.19181forward
CNT30335392Cajanus cajanCynara cardunculus16.3624.0584.69196forward

Expression of CNT30620550

Peptides detected in this lncRNA

>peptide 1 (39 aa)
MPASARLTVVTAGEEIIEEAISLTFVVLLVLLLLQCQASA

>peptide 2 (57 aa)
MQGKWVLEVIWKQCNTDTAYSLVLIHSFPVKSENRKPNYRMKSQKAKTKAKANGNLV*

>peptide 3 (66 aa)
METMQHRHSLFISSHPFISSEVRKQKAKLQDEISKSKNKSKSKWEFGLSTNKQSRAATNGLQIFHT*

>peptide 4 (89 aa)
MGIWFKYKQTKQGGYKWFANFSYLDAWWLVGNERDALHLANVVESNDTDERVGVFLLGLLNLLQHLRRICAAKHRQLPHGPVASIIVSR*

Sequence

>CNT30620550
GCTCAACTATGCTGTGAACTTAAGTAACACAGGTTGAGTTCCTTTGTTAACTCCAATTTAGTAAAGGTTTCAACCCACTGGAGGGAAATGCAAGGTAAAT
GGGTTCTTGAAGTTATATGGAAACAATGCAACACCGACACAGCTTATTCATTAGTTCTCATCCATTCATTTCCAGTGAAGTCCGAAAACAGAAAGCCAAA
TTACAGGATGAAATCTCAAAAAGCAAAAACAAAAGCAAAAGCAAATGGGAATTTGGTTTAAGTACAAACAAACAAAGCAGGGCGGCTACAAATGGTTTGC
AAATTTTTCATACTTAGACGCCTGGTGGCTTGTAGGCAATGAAAGAGATGCATTGCACTTGGCGAACGTTGTCGAATCCAATGATACGGATGAAAGAGTT
GGGGTATTCCTTCTTGGCCTCTTGAACCTCCTTCAACACCTGAGAAGAATCTGTGCAGCCAAACATAGGCAGCTTCCACATGGTCCAGTAGCGTCCATCA
TAGTATCCAGGTGACTTGTGGTGCTCACGGTAAACCCAACCGTGCTATAAACAAACAAACAGATCAACCATCAAAACTCAACACCAAGTCCTTCTTTTGG
TATAACAGCATTTCGTTAAATATTGATAACTCTCATAGAGTATTAGAACCAAAAAGATCTATGAGATAAACTTGAATTTTGGAAAACAACCATTTTTCCT
TTTGTTTTGCTAAGTACTTTTAGCACACCTGCTAGAAAAGTGATTATTTCTTCGAAATAAGTTGAATTAAACACACTGAAAGTCTGTTGAGATACAGATT
CATAAGTACATCTTTATTGAAAATAATGAGTTTTTTCTAACACAAGTTTTCAAAAGCTCTTATAAGCTTGTATCGAAATAAACTGTAGAAAAAGCTATAA
TTGAAGTAAAAGGGCTTGCAATAAATTGACCTCCAACTCGAATTCCAAGCAAGGAATCCATCCTTTCCTGAGAAGGTAGTCTACTTCCTTGCCCAATTCA
GCATCACTGAGGGGTGGCAGGTAGGAAAGAGTCTCGAACTTCTTCTTGCCAAGTGGAGGCCAGTGAATGGAGCCACCATGCCAGCATCGGCACGGTTAAC
AGTGGTAACAGCTGGGGAGGAGATCATTGAGGAAGCCATTTCCTTAACCTTCGTAGTTCTACTTGTGCTTCTGCTGCTACAATGCCAAGCTTCTGCTC