Detailed information on CNT30543822


BLAST search results

BLAST vs Swiss-Prot:
sp|P27985|RBS2_BRANA, E-value = 5e-58

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30317063Brassica napusCorylus avellana62.7631.4980.22182forward
CNT30512567Brassica napusJuglans regia24.4816.9991.5571forward
CNT30378198Brassica napusArabidopsis thaliana88.2833.0389.06256forward
CNT30616510Brassica napusSesamum indicum28.285.9489.0282forward
CNT30279731Brassica napusChenopodium quinoa33.17.3386.4696forward
CNT30727189Brassica napusCorchorus capsularis66.5523.6282.9193forward
CNT30508072Brassica napusNicotiana attenuata21.387.2591.9462forward
CNT30166270Brassica napusPistacia vera28.9712.990.4884forward
CNT30591347Brassica napusMusa acuminata20.349.0993.2259forward
CNT30146185Brassica napusMedicago truncatula29.317.0787.0685forward
CNT30312471Brassica napusCamelina sativa91.0335.2593.18264forward
CNT3062250Brassica napusArabidopsis lyrata91.3824.9191.32265forward
CNT30261376Brassica napusBrassica rapa92.0766.7598.88267forward
CNT30613234Brassica napusArabis alpina91.0346.3289.77264forward
CNT30479552Brassica napusArabidopsis halleri80.6940.7790.17234forward
CNT30620550Brassica napusCajanus cajan65.8615.9481.15191forward
CNT30355778Brassica napusLactuca sativa59.3121.8882.56172forward
CNT3026569Brassica napusPopulus trichocarpa24.8318.8587.572forward
CNT30176139Brassica napusVigna angularis21.724.6988.8963forward
CNT30725197Brassica napusLupinus angustifolius61.7225.3581.56179forward
CNT3040426Brassica napusMarchantia polymorpha26.2113.4388.1676forward

Expression of CNT30543822

Peptides detected in this lncRNA

>peptide 1 (95 aa)
VKFSSIDYYMIVLERKLSTGEAWWLVGDETDALDLTVVVESNDSNKGVRVLRLALLHFLQHLSRVSASEQRKLPHCPITAIVVSRCASMLTVHKSV

Sequence

>CNT30543822
AAGTGAAATTCTCAAGTATAGATTATTATATGATTGTTTTAGAAAGGAAATTAAGCACCGGTGAAGCTTGGTGGCTTGTAGGCGATGAAACTGATGCACT
GGACCTGACGGTTGTTGTCGAATCCAATGATTCTAATAAAGGCGTTAGGGTACTCCGTCTTGCACTCTTGCACTTCCTTCAACACTTGAGCAGAGTCAGT
GCATCCGAACAAAGGAAGCTTCCACATTGTCCAATAACGGCCATCGTAGTATCCAGGTGTGCTTCCATGCTCACGGTACACAAATCCGTG