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Detailed information on CNT30629679


BLAST search results

BLAST vs Swiss-Prot:
sp|P07398|RBS3_WHEAT, E-value = 2e-35

BLAST vs NONCODE:
NONCQUT001608, E-value = 5e-28

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30402284Vigna unguiculataBeta vulgaris15.3638.3688.184forward
CNT30525342Vigna unguiculataPhaseolus vulgaris65.0834.9488.2356forward
CNT30196843Vigna unguiculataPisum sativum36.0141.3982.74197forward
CNT3091744Vigna unguiculataSolanum tuberosum36.0119.285.28197forward
CNT30146823Vigna unguiculataMedicago truncatula33.6430.6781.52184forward
CNT30573761Vigna unguiculataVitis vinifera14.0820.0589.6177forward
CNT3026569Vigna unguiculataPopulus trichocarpa29.9842.9381.1164forward
CNT30335392Vigna unguiculataCynara cardunculus36.224.2982.83198forward

Expression of CNT30629679

Peptides detected in this lncRNA

>peptide 1 (95 aa)
MSENRNQNYRMVESQKEKTKWEFGLNTNKETKWCGGVTNVADLEARGLVGNETDALDLTNVVESNDTDEAVGVSSPGLYNLLQHLSSISAPKHRQ*

>peptide 2 (31 aa)
MGIWFKYKQRNKVVWGGYKCSRLRSQGPCRQ*

Sequence

>CNT30629679
AACAAGACATCAGCAGCTAATGCATTAATTATCTCATCCATTCATGTCTGAAAACAGAAACCAAAATTACAGGATGGTGGAATCTCAGAAAGAGAAAACG
AAATGGGAATTTGGTTTAAATACAAACAAAGAAACAAAGTGGTGTGGGGGGGTTACAAATGTAGCAGACTTAGAAGCCAGGGGCCTTGTAGGCAATGAAA
CTGATGCACTGGACTTGACGAACGTTGTCGAATCCAATGATACGGACGAAGCCGTTGGGGTGAGCAGTCCTGGCCTCTACAACCTCCTGCAACACCTGAG
TAGCATCAGTGCACCCAAACATAGGCAATGAAACTGATGCACTGGACTTGACGAACGTTGTCGAATCCAATGATACGGACGAAGCCGTTGGGGTGAGCAG
TCCTGGCCTCTACAACCTCCTGCAACACCTGAGTAGCATCAGTGCACCCAAACATAGGCAGCTTCCACATGGTCCAGTACCTTCCATCATAGTATCCAGG
TGACCTGTTTTGCTCACGGTATGGGAATGGGTCCTATAAACCAAAAA