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Detailed information on CNT30508073


BLAST search results

BLAST vs Swiss-Prot:
sp|P69250|RBS1_NICSY, E-value = 4e-48

BLAST vs NONCODE:
NONCQUT001608, E-value = 3e-28

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30512567Nicotiana attenuataJuglans regia19.6652.6383.18220forward
CNT30378299Nicotiana attenuataArabidopsis thaliana11.4428.2685.94128forward
CNT30616445Nicotiana attenuataSesamum indicum8.5825.4689.5896forward
CNT30268101Nicotiana attenuataChenopodium quinoa19.8423.0383.78222forward
CNT3020258Nicotiana attenuataCitrullus lanatus16.8926.7781.48189forward
CNT30727206Nicotiana attenuataCorchorus capsularis20.119.7783.11225forward
CNT3069740Nicotiana attenuataQuercus suber18.522.8583.09207forward
CNT30402284Nicotiana attenuataBeta vulgaris19.4899.5480.73218forward
CNT30525466Nicotiana attenuataPhaseolus vulgaris18.9571.3881.13212forward
CNT30629734Nicotiana attenuataVigna unguiculata17.1621.5582.29192forward
CNT30712618Nicotiana attenuataGlycine max18.4135.2781.07206forward
CNT3091618Nicotiana attenuataSolanum tuberosum20.5519.8893.04230forward
CNT30613376Nicotiana attenuataArabis alpina12.0632.5383.7135forward
CNT30648517Nicotiana attenuataRosa chinensis19.5742.9481.28219forward
CNT3026569Nicotiana attenuataPopulus trichocarpa15.6445.8181.14175forward
CNT3038822Nicotiana attenuataCucumis melo19.2148.3182.33215forward
CNT30176025Nicotiana attenuataVigna angularis11.7120.4785.5131forward
CNT3039544Nicotiana attenuataMarchantia polymorpha521.0592.8656forward

Expression of CNT30508073

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MEVMSRFCFLEIGKEEADLRPVKGATMLA*

>peptide 2 (53 aa)
MLTSVSNSKQGTHPFFKRYSTSLSNCSSLKSGRYESVSYFFLLIGGHTYIYPT*

>peptide 3 (41 aa)
MEILKAFGLVGNETDALHLTDVVESNDSDPGLWAMKLMHCT*

>peptide 4 (86 aa)
MLLHLVKYTDSAEFFIVLSVYCKLNPYNIYYKLDLHALNSSTIASNGSNVKILFPGNREGGGGLEASEGCNHAGLSSIGAGRNSSC*

Sequence

>CNT30508073
CTTGATTGGAATTCAAAAACATACATTGAATAGAATGAAGGAGGGAAAACCAAAACAGTTTCTCCGGGGAAAAACATAAGGATAATATTCAACGAAACTT
CCCCTAAAGACATAGGTTAAGTTGTCTCAAAAATGGAGATATTAAAAGCCTTCGGGCTTGTAGGCAATGAAACTGATGCACTGCACTTGACGGACGTTGT
CGAATCCAATGATTCTGATCCAGGCTTGTGGGCAATGAAACTGATGCACTGCACTTGACGGACGTTGTCGAATCCAATGATTCTGATCCAGGCTTGTGGG
TAAGCCTTCTTTGCCTCCTCTACCTCAGCCAAGACCTGAGTGGCATCAGTGCACCCGAACATGGGCAACTTCCACATGGTCCAGTATCTGCCATCGTAGT
ACCCTGGTGACTTGTTGTTTTCACGGTAGACGAATCCGTGCTGCACATATATCCACAAGATAAACAAAACATTAACACGACATAATACTCCTCTTTCACT
TAATCACCTATATATGTCTAATCCAAAACTAGTTAGGATTGAGTAATTCATGTTAGGTATGCTTGATAATAGTAGCAAGATTTAGAATAGATGTTGACCT
CAGTCTCGAATTCCAAGCAAGGAACCCATCCATTTTTCAAAAGGTACTCAACTTCCCTAAGCAATTGCTCCTCGCTCAAATCAGGAAGGTATGAGAGTGT
CTCGTACTTCTTCTTGTTAATTGGTGGCCACACCTACATATATCCCACATAAAAAATTTAAAGAAGCTCCATAAATGTTACTCCACTTAGTGAAATATAC
TGATAGTGCAGAGTTCTTTATAGTACTATCAGTATATTGCAAGTTAAATCCATATAATATATACTACAAATTAGACCTGCATGCATTGAACTCTTCCACC
ATTGCTAGCAATGGAAGTAATGTCAAGATTTTGTTTCCTGGAAATAGGGAAGGAGGAGGCGGACTTGAGGCCAGTGAAGGGTGCAACCATGCTGGCTTGA
GCAGCATTGGCGCCGGTCGCAACAGCAGCTGCTGAGGACATAACTGAGGAAGCCATTTCTGAGAACAATTTCTTGGCTTAAAGCTATTGCTACCTTTTAC
CTTTGCTTTCAGGAGGGTT