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Detailed information on CNT30356658


BLAST search results

BLAST vs Swiss-Prot:
sp|P13951|RBS_SINAL, E-value = 2e-42

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30317063Lactuca sativaCorylus avellana10.4629.7681.4172forward
CNT30279728Lactuca sativaChenopodium quinoa12.8328.4884.36211forward
CNT30727207Lactuca sativaCorchorus capsularis12.8320.6981.99211forward
CNT30402284Lactuca sativaBeta vulgaris5.5942.0191.392forward
CNT30710937Lactuca sativaGlycine max12.9521.9483.57213forward
CNT30437317Lactuca sativaAegilops tauschii5.474087.7890forward
CNT30623620Lactuca sativaDaucus carota12.8338.4383.41211forward
CNT3026569Lactuca sativaPopulus trichocarpa5.2322.5188.3786forward
CNT3038822Lactuca sativaCucumis melo12.1644.9482200forward
CNT3039544Lactuca sativaMarchantia polymorpha3.9524.4490.7765forward

Expression of CNT30356658

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MKLMHCTWRTLSNPITRMKALGYSFLHSPISFMT*

>peptide 2 (62 aa)
MKVIFKMKLLNYNNSEKDEKSTSNSNSKQGTHLLRRREEKSLAFLVTGKAELDLRPVNGATA*

Sequence

>CNT30356658
GCACAACTCAAAACATAAGGAGATGGAAGCATACATTTAACCACAAATAAATATTTTATACGTTTCCCTTTATCCACCTCATACAAATTCGGGAATGAAC
AACGAAACATACAGAAAATCTGAAAATCGACAAATTCGCATATAAGTAAAAAGAAATTAATGAAGAACCCTAAAGGTTCAACAAACCCAACCCATTATAA
CCAGATTAAATCGCTTAGAGAACGCCTGGTGGTTTGGAAACAATGAAACTGATGCATTGCACTTGGCGAACATTGTCAAATCCGATAACACGGATGAAGG
CGTTGGGGTACTCCTTCTTGCACTCTCCGATCTCCTTCATGACCTGAGCTGAGTCAGTGCACCCAAACATAGGCAACTTCCACATTGTCCAGTAGCGTCC
ATCATAGTATCCGGGGGAGTGGTGGTGCTCACGGTAGACGAAACCGTGCTATATAAAGACAAGTATATATACCACCCAAAAACGTTAGCTAGGGTTACTC
TACAATTGTAATTTTTGATTATTCAAATAGTTAAAAATTTTGAAAATGAAATGATGTAATTATTCCTAGTTAAATCAAGGTTGGTGATAAATTTTAAGTA
GCATGCATGTACATGAGACTTGAGAAGTTGTTGCTAAAACAGTAAATAAAAAAACAAATTGGGTTTTTGCCGAGGGTATTGAGTTTAAAACTATATATAA
ATGTTATCCGTCATTATAACTTATAAGCCATTTTTACAAATAAGTAATAATTGCTTGTTCATTAATACTTATATATCATAATGTCCAAATTTTAGTCAAA
ATTAGATAAAAATTTATTGATCAAATACTTAAATATATATATCATGAATAACCAATTAACTAAAAATTTGTACTTATTTACTAATATGTAAAAAAGATAA
ATTCCCTCGAGATTAAAACTTTGGGTCAAATATATATTTAAATTCAACGATTTTAGCATGTATTATTCATTTTATAATGTTTTAATGCTTGCAATTTTTT
TATCTCAATAATTGAGGTTTTAATTTTTAAATTTTTTTTTCAAATAAAGTGCGAATGAATGCGAACTTTAAAAATATGAACTAATAACAACCTAACAAAA
AGAGTAACACTTTATTATGCAAACAAAAAGTATGAATTATAAGTTGTCTCAAAACATATATGGGTTTTAAAAAGTTTTTTCATTTGCAAGATTATAAATA
TGCATTGAAACTATGCTAAAAAAGATCAAGGTCATCAAATTTTTAGCATACTTTATGATAGATGAAAGTTATTTTTAAAATGAAGTTATTAAATTATAAT
AATTCAGAAAAAGATGAGAAATCGACCTCCAACTCGAATTCCAAGCAAGGAACCCATTTGTTGCGGAGAAGGGAGGAGAAGTCGTTAGCCTTCTTGGTGA
CAGGGAAAGCAGAGTTGGACTTGAGGCCGGTGAACGGAGCCACGGCTTGAGCGGGGGCAGCACGGCTGACAGTGGCTACTGCAGAGGAGATCGAGGCCAT
TTTAGTAATTTTACTTTAAGGCTACCCTTTGCAAATTCAGTGACTCAAAACAGTTTTCGTAGCTCTATTTATAATAGTTGTAAATGAGCAATCGCTTTGC
TACATGCCATCCAACGGATACAAACAAATGAGTCTAAACCTCAGC