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Detailed information on CNT30727206


BLAST search results

BLAST vs Swiss-Prot:
sp|P13951|RBS_SINAL, E-value = 2e-43

BLAST vs NONCODE:
NONCQUT001608, E-value = 7e-40

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30317063Corchorus capsularisCorylus avellana8.0332.0189.19185forward
CNT30512567Corchorus capsularisJuglans regia9.6453.1186.49222forward
CNT30377290Corchorus capsularisArabidopsis thaliana8.7222.6485.57201forward
CNT30616445Corchorus capsularisSesamum indicum9.5558.3683.18220forward
CNT3020258Corchorus capsularisCitrullus lanatus8.5928.0583.33198forward
CNT3069740Corchorus capsularisQuercus suber8.9422.7486.89206forward
CNT30402284Corchorus capsularisBeta vulgaris9.4299.0982.49217forward
CNT30525466Corchorus capsularisPhaseolus vulgaris8.263.6482.01189forward
CNT30508073Corchorus capsularisNicotiana attenuata9.7720.1183.11225forward
CNT30166270Corchorus capsularisPistacia vera9.0732.183.73209forward
CNT30565205Corchorus capsularisActinidia chinensis8.8125.0981.77203forward
CNT3059910Corchorus capsularisArabidopsis lyrata8.3336.6486.46192forward
CNT30605276Corchorus capsularisGossypium raimondii7.8145.5789.44180forward
CNT30648517Corchorus capsularisRosa chinensis9.4242.5584.33217forward
CNT30623620Corchorus capsularisDaucus carota9.2938.9882.71214forward
CNT30479552Corchorus capsularisArabidopsis halleri10.2441.1183.05236forward
CNT30355778Corchorus capsularisLactuca sativa9.0726.5981.34209forward
CNT30408726Corchorus capsularisPapaver somniferum7.8127.2782.22180forward
CNT3026569Corchorus capsularisPopulus trichocarpa7.5145.2985.55173forward
CNT3038822Corchorus capsularisCucumis melo9.5949.6686.88221forward
CNT30585439Corchorus capsularisEchinochloa crusgalli5.620.3884.5129forward
CNT30725197Corchorus capsularisLupinus angustifolius8.2927.0585.34191forward

Expression of CNT30727206

Peptides detected in this lncRNA

>peptide 1 (45 aa)
MRESRTSSSQVVAIPKFTNFNKLDSNFIQLNLKLSFEIHHLILRI*

>peptide 2 (42 aa)
MIYIHTCMHRTLPPLLTIEVMSLLFLRVVGKAEADLRMLHTS*

>peptide 3 (36 aa)
MILMKDSGYSFLASSSSFNTWDESVHPNMGSFHMVQ*

>peptide 4 (36 aa)
MILMKDSGYSFLASSSSFNTWDESVHPNMGSFHMVQ*

>peptide 5 (78 aa)
MHTCMHRTLPPLLTMEVMSLLFLRVVGKAEADLRPTNGATMEACAGEARLTTVADDIIEEAIASTPYAKGLCTNIIST*

>peptide 6 (66 aa)
MFNCSNCCAYIYAYLHASNSATIADDGGDVFVVLAGGGESRGRLEANEWGDHGGLCGGGTANDGGG*

>peptide 7 (56 aa)
MSQCTRTWEVSTWSSSVHRSTLGSCGSYGRRIRATQGNTKFNISKKQRKKRECKLN*

>peptide 8 (53 aa)
MSRCTRTWEVSTWSSSVHRSTLGSCGSYGRRIRATQGNTKFNISKKQRKKKRV*

>peptide 9 (35 aa)
MENDLQFEFQARNPSRAEKVIYFLSQLHRAEIREV*

>peptide 10 (35 aa)
MENDLQFEFQARNPSRAEKVVYFLSQLHGGEIREV*

>peptide 11 (33 aa)
MKESRTSSFQVVAIPKFTFQTNWIQISSKYTLH*

Sequence

>CNT30727206
TGAATTTCAAAGATCTCTTAAGATGGAAGAACCATAAGTAAAACAAATACAACCAAGTAAAGCAAATATATAGTTGGAGAACTTAAAATACAGAGAAAAG
GGTTCATAAAATATATGGCAAGGAACTAGTATCTTTATTATTCATTAAGTTCTCAGCCGTTCCATTGGAAATCAAAAACCCAGAATTCAAAAAAACAAAG
GACAATACCTCAAAAAGAAAGGAAAAGTAAAAAGGTTTCGACAAATGCTAAGTACAATTTAAACAAGCCGAATCCCTACAATGTGGGGAAAACAACTCTG
TTCATTTAAGCTGAGGTGAAGCTTGGGGGCTTGTAGGCAATGAAACTGATGCATTGCACTTGACGCTTGTTGTCGAATCCAATGATTCTGATGAAGGACT
CGGGGTATTCCTTCTTGGCCTCCTCAAGCTCCTTCAACACCTGGGATGAGTCGGTGCACCCGAACATGGGAAGTTTCCACATGGTCCAGTAGCGTCCATC
GTAGTACCCTGGGGAGCTGTGGTTCTTACGGTAGACGAATCCGTGCTACACAAGGCAATACCAAATTCAATATCAGCAAAAAACAGAGAAAAAAAAAGAG
AGTGTAAATTAAACTAAGTTTAGTTATAGAGAGAGCATGGAAAATGGAAAATGACCTCCAATTCGAATTCCAAGCAAGGAATCCATCCAGAGCGGAGAAG
GTAATCTACTTCCTTAGCCAATTGCACAGGGCTGAGATCAGGGAGGTATGAAAGAGTCTCGAACTTCTTCTTTCCAAGTGGTGGCCATACCTAAATTCAC
ATTTCAAACAAATTGGATTCAAATTTCATCAAAATATACATTACACTAAAGAAATTTAAGAAATTAGCTTTGCTATTAAAGCTTAATATGTTCAATTGTA
GTAATTGTTGAGCATATATGATATATATACATACCTGCATGCATCGCACTTTGCCACCATTGCTTACAATAGAAGTAATGTCCTTGTTGTTCTTGCGGGT
GGTGGGGAAAGCAGAGGCAGACTTGAGAATGTTACATACAAGTTAAACAAGCCGAAACCCTACAATTGTGGGGTGTTCATTTTCTTAAGCTGAGGTGAAG
CTTGGGGGCTTGTAGGCAATGAAACTGATGCATTGCACTTGACGCTTGTTGTCGAATCCAATGATTCTGATGAAGGACTCGGGGTATTCCTTCTTGGCCT
CCTCAAGCTCCTTCAACACCTGGGATGAGTCAGTGCACCCGAACATGGGAAGTTTCCACATGGTCCAGTAGCGTCCATCGTAGTACCCTGGGGAGCTGTG
GTTCTTACGGTAGACGAATCCGTGCTACACAAGGCAATACCAAATTCAATATCAGCAAAAAACAGAGAAAAAAAAGAGAGTGTAAATTAAACTAAGTTTA
GTTATAGAGAGAGCATGGAAAATGGAAAATGACCTCCAATTCGAATTCCAAGCAAGGAATCCATCCAGAGCGGAGAAGGTAGTCTACTTCCTTAGCCAAT
TGCACGGGGGTGAGATCCGGGAGGTATGAGAGAGTCTCGAACTTCTTCTTCCCAAGTGGTGGCCATACCTAAATTCACCAATTTCAACAAATTGGATTCA
AATTTCATCCAATTGAATTTGAAATTGTCATTTGAAATTCATCATCTTATACTACGTATATGAAATATTTAATCATAATTGCTTCCCCTACTTGAATCTG
TGATATCTGATATGTCTCAATTTCTGATTAACTAAGACCCAATAATGTAGTTACCGTATATCAGGAGTTTCGTACACAATTTATTTATATATATGGGGGT
ATGTGCATTTCTTCCTATTAGGTAATATATATAAATGAGATCCAAATTCAAATCTAAAATCTACATTTTCCCAAACATAGCATGACAAATTGAAAGAATT
TAGCTTTGCTAATTAAAGCTTTAATATGTCATTTTATGTTCAATTGTAGTAATTGTTGTGCATATATATATGCATACCTGCATGCATCGAACTCTGCCAC
CATTGCTGACGATGGAGGTGATGTCTTTGTTGTTCTTGCGGGTGGTGGGGAAAGCAGAGGCAGACTTGAGGCCAACGAATGGGGCGACCATGGAGGCCTG
TGCGGGGGAGGCACGGCTAACGACGGTGGCGGATGACATCATTGAGGAAGCCATTGCTAGTACTCCTTATGCTAAAGGACTATGTACTAATATAATCAGT
ACTTAATAGTGATTCTGCCCAACTGCCAATACCCCCTATATATAATGAAAAACTTTGGCCATCTCATATCCTATGGTTACAACATTTTGAGCCTAATTTC
GGAT