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Detailed information on CNT30402284


BLAST search results

BLAST vs Swiss-Prot:
sp|P00870|RBS1_SPIOL, E-value = 3e-46

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30535503Beta vulgarisEucalyptus grandis94.0623.8781.55206forward
CNT30317063Beta vulgarisCorylus avellana26.9410.2191.5359forward
CNT30514517Beta vulgarisJuglans regia94.5235.3282.61207forward
CNT30372132Beta vulgarisArabidopsis thaliana99.0933.5982.03217forward
CNT30616445Beta vulgarisSesamum indicum43.3825.285.2695forward
CNT30282594Beta vulgarisChenopodium quinoa99.0940.5686.18217forward
CNT3020258Beta vulgarisCitrullus lanatus85.8426.6381.38188forward
CNT30727206Beta vulgarisCorchorus capsularis99.099.4282.49217forward
CNT3069740Beta vulgarisQuercus suber97.2623.5182.16213forward
CNT30381490Beta vulgarisManihot esculenta27.49.4893.3360forward
CNT30525342Beta vulgarisPhaseolus vulgaris37.98.1589.1683forward
CNT30629679Beta vulgarisVigna unguiculata38.3615.3688.184forward
CNT30196843Beta vulgarisPisum sativum37.917.4489.1683forward
CNT30508073Beta vulgarisNicotiana attenuata99.5419.4880.73218forward
CNT30712618Beta vulgarisGlycine max38.3614.3890.4884forward
CNT30166270Beta vulgarisPistacia vera94.0631.6481.55206forward
CNT30633374Beta vulgarisCapsicum annuum42.9210.9687.2394forward
CNT3091744Beta vulgarisSolanum tuberosum43.389.2692.6395forward
CNT30565197Beta vulgarisActinidia chinensis39.277.3586.0586forward
CNT30235483Beta vulgarisBrassica oleracea47.4918.4783.65104forward
CNT30508846Beta vulgarisSolanum lycopersicum42.4719.5486.0293forward
CNT30146145Beta vulgarisMedicago truncatula37.97.8287.9583forward
CNT30313480Beta vulgarisCamelina sativa83.1129.8981.87182forward
CNT3059910Beta vulgarisArabidopsis lyrata83.1134.7381.87182forward
CNT30613234Beta vulgarisArabis alpina94.0636.1480.58206forward
CNT30599194Beta vulgarisFraxinus excelsior26.949.2291.5359forward
CNT30605276Beta vulgarisGossypium raimondii82.1945.5783.89180forward
CNT30648517Beta vulgarisRosa chinensis99.5442.7581.65218forward
CNT30479552Beta vulgarisArabidopsis halleri99.0937.881.11217forward
CNT30620550Beta vulgarisCajanus cajan36.536.689080forward
CNT30356658Beta vulgarisLactuca sativa42.015.5991.392forward
CNT3026569Beta vulgarisPopulus trichocarpa37.921.7386.7583forward
CNT30120451Beta vulgarisCitrus clementina31.0516.1589.7168forward
CNT3038822Beta vulgarisCucumis melo98.1748.3181.86215forward
CNT3039544Beta vulgarisMarchantia polymorpha27.422.5693.3360forward

Expression of CNT30402284

Peptides detected in this lncRNA

>peptide 1 (62 aa)
RLVGNETNALHLTFVVKPNDPNKSIRVSLLDLLNLVHYLSWVSAPKHGQLPHSPVATIIVSW*

Sequence

>CNT30402284
AGGCTTGTAGGCAATGAAACTAATGCATTGCACTTGACGTTTGTTGTCAAACCCAATGATCCTAACAAAAGCATCAGGGTAAGCCTTCTTGACCTCCTCA
ACCTCGTTCACTACTTGAGCTGGGTCAGTGCACCCAAACATGGGCAACTTCCACATAGTCCAGTAGCGACCATCATAGTATCCTGGTGAGTTGTTGTGCT
CACGGTATACAAATCCGTC