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Detailed information on CNT3091618


BLAST search results

BLAST vs Swiss-Prot:
sp|P07398|RBS3_WHEAT, E-value = 8e-41

BLAST vs NONCODE:
NONCQUT001608, E-value = 3e-40

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30512567Solanum tuberosumJuglans regia19.152.8783.71221forward
CNT30616445Solanum tuberosumSesamum indicum8.325.4688.5496forward
CNT30727207Solanum tuberosumCorchorus capsularis19.5322.1681.86226forward
CNT3069740Solanum tuberosumQuercus suber18.3223.482.08212forward
CNT30508073Solanum tuberosumNicotiana attenuata19.8820.5593.04230forward
CNT30633374Solanum tuberosumCapsicum annuum39.5953.3888.21458forward
CNT30310285Solanum tuberosumCamelina sativa5.1927.491.6760forward
CNT30648517Solanum tuberosumRosa chinensis18.7642.5582.49217forward
CNT3026569Solanum tuberosumPopulus trichocarpa15.1345.8180.57175forward
CNT3038822Solanum tuberosumCucumis melo18.6748.5481.48216forward

Expression of CNT3091618

Peptides detected in this lncRNA

>peptide 1 (70 aa)
MPVGKPSLPPPPQPRPGLHQYTRTWATSTWSSICHRSILVTCCSHGTQIRAAHIYPTTQHIKNLVLTSKF*

>peptide 2 (50 aa)
MLTSVSNSKQGTHPFFNRYSTSLSNCSSDKSGRYERVSYFFMLIGGHTYT*

>peptide 3 (68 aa)
MHLTLPPLLAMEVMSRFCFLETGKEAVDLRPVKGATMLACAPLPRVATAAEDITEEAISECLSLLPLNS

>peptide 4 (57 aa)
AIFTNRLVKKQMSLIVLVNLIEIRIDHTLNRRRRKTRENEYNFSREKPKENSNKLSL*

Sequence

>CNT3091618
AAGCAATTTTCACAAACAGATTAGTAAAGAAACAAATGTCATTAATAGTTCTTGTAAACTTGATTGAAATTCGAATTGATCATACACTGAATAGAAGAAG
AAGGAAAACAAGGGAAAATGAATACAATTTCTCCCGGGAAAAACCAAAGGAGAATTCAAACAAACTGTCCCTATAGAAATAGGGCAATTAGTTATCTTTA
GAACTTAGTATCCTTCGGGCTTGTAAGCAATGAAACTGATACACTGCACTTGACGAACGTTGTCGAATCCGATGATACGGATCCATGCCTGTGGGTAAGC
CTTCTTTGCCTCCTCCACCTCAGCCAAGACCTGGGAGGATTCAAACAAGCTTCCCCTAAATACATAGGGTCAGTTATACATTACATTAATTAAAACTTGG
CATTTTAGTATCCTTCGGGCTTGTAAGCAATGAAACTGATGCACTGCACTTGACGAACGTTGTCGAATCCGATGATACGGATCCATGCCTGTGGGTAAGC
CTTCTTTGCCTCCTCCACCTCAGCCAAGACCTGGGTTGCATCAGTACACCCGAACATGGGCAACTTCCACATGGTCCAGTATCTGCCATCGTAGTATCCT
GGTGACTTGTTGTTCTCACGGTACACAAATCCGTGCTGCACATATATATCCCACAACACAACATATTAAAAACTTAGTACTAACTAGTAAATTTTAAAAA
CAGAGGAGATCAATGTTAACCTCAGTCTCGAATTCCAAGCAAGGAACCCATCCATTTTTCAATAGGTACTCAACTTCCTTGAGCAATTGCTCGTCGGATA
AATCAGGAAGGTATGAGAGAGTCTCGTACTTCTTCATGTTAATTGGTGGCCACACCTATACATAAATAGTTAATCAAACAAATTAGCGACTATAACATTT
TGGTCAATGAATTTTGTTGTTTAATTTGACTAGTATACACAAACCTGCATGCATCTGACTCTTCCACCATTGCTAGCAATGGAGGTAATGTCAAGGTTTT
GCTTCCTTGAAACAGGGAAAGAGGCGGTGGACTTGAGGCCAGTGAAGGGTGCAACCATGCTGGCTTGTGCACCATTGCCGCGGGTGGCAACAGCTGCTGA
GGACATCACTGAAGAAGCCATTTCTGAGTGTTTATCTTTGCTTCCCTTGAACTCAAG