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Detailed information on CNT30166270


BLAST search results

BLAST vs Swiss-Prot:
sp|P13951|RBS_SINAL, E-value = 5e-42

BLAST vs NONCODE:
NONCQUT001608, E-value = 3e-39

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30535656Pistacia veraEucalyptus grandis25.8133.683.93168forward
CNT30512567Pistacia veraJuglans regia31.6449.2887.38206forward
CNT30372132Pistacia veraArabidopsis thaliana28.5728.7982.8186forward
CNT30616445Pistacia veraSesamum indicum12.2921.2286.2580forward
CNT30268359Pistacia veraChenopodium quinoa31.3435.2387.25204forward
CNT30727206Pistacia veraCorchorus capsularis32.19.0783.73209forward
CNT3069740Pistacia veraQuercus suber33.6424.1787.21219forward
CNT30402284Pistacia veraBeta vulgaris31.6494.0681.55206forward
CNT30525466Pistacia veraPhaseolus vulgaris11.0624.2493.0672forward
CNT30710856Pistacia veraGlycine max33.6421.3281.74219forward
CNT30543822Pistacia veraBrassica napus12.928.9790.4884forward
CNT30235483Pistacia veraBrassica oleracea28.5733.0481.18186forward
CNT30310235Pistacia veraCamelina sativa27.9621.3681.32182forward
CNT3061903Pistacia veraArabidopsis lyrata28.7319.6482.89187forward
CNT3075084Pistacia veraBrassica juncea28.5721.4381.72186forward
CNT30261239Pistacia veraBrassica rapa28.5723.5481.72186forward
CNT30613234Pistacia veraArabis alpina27.9631.9380.77182forward
CNT30605276Pistacia veraGossypium raimondii27.545.3285.47179forward
CNT30648517Pistacia veraRosa chinensis33.6442.9483.56219forward
CNT30479552Pistacia veraArabidopsis halleri28.5732.482.26186forward
CNT30620550Pistacia veraCajanus cajan33.6418.2882.65219forward
CNT30705707Pistacia veraPrunus avium28.4216.4282.16185forward
CNT3030395Pistacia veraTheobroma cacao15.8241.285.44103forward
CNT3026569Pistacia veraPopulus trichocarpa33.9557.8581.45221forward
CNT3038822Pistacia veraCucumis melo31.6446.2981.07206forward
CNT30335392Pistacia veraCynara cardunculus32.7226.1382.16213forward
CNT3039544Pistacia veraMarchantia polymorpha8.621.0591.0756forward

Expression of CNT30166270

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MIRIKALGYAFLHSWSSLATCAGSVHPNMGNFHITQ*

>peptide 2 (77 aa)
RLLGFFFFFFFFFFFFFFFFFFFFLHTKLPFIQQFSPIPSESGPEIEKKGKEISPKTKRKTAKKKKKVVFRNSLSTV*

>peptide 3 (67 aa)
MPSCIPGAPWPLVPDLCIRTWATSTSPSSVHHSILETCGSHGRLEAIEGGNHGGLSRAGAVHGGHGG*

Sequence

>CNT30166270
TTAGGTTGCTAGGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCACACAAAACTACCTTTTATTCA
ACAATTCTCACCCATTCCATCGGAATCCGGACCAGAAATTGAAAAGAAAGGGAAAGAAATATCTCCAAAAACAAAACGGAAAACAGCAAAAAAAAAAAAA
AAAGTAGTGTTCAGAAACAGCCTAAGTACAGTTTAAAGAAACAAACCGACCCTCATGAACGAAGGGCACATAATAATCATAAGAAAGAAATAAATTTAGA
CGCCTGGTGGCTTGTAGGCAATGAAACTGATGCACTGCACTTGACGCTTGTTGTCGAATCCAATGATTCGGATAAAGGCATTGGGGTATGCCTTCTTGCA
TTCCTGGAGCTCCTTGGCCACTTGTGCCGGATCTGTGCATCCGAACATGGGCAACTTCCACATCACCCAGTAGCGTCCATCATAGTATCCTGGAGACCTG
TGGTTCTCACGGTAGACTTGAGGCCATTGAAGGGGGCAACCATGGAGGCCTGAGCCGGGCTGGCGCGGTTCACGGTGGCCACGGTGGCTGAAGAGATCAT
TGAGGAAGCCATTTCTTCTTTCTTCTTTTGCTTAGAGTAGCAAACTTTTTG