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Detailed information on CNT30623316


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690183Daucus carotaOryza sativa26.9725.7987.882forward
CNT30618209Daucus carotaSesamum indicum2512.188.1676reverse complement
CNT30272829Daucus carotaChenopodium quinoa27.6327.3685.7184forward
CNT3021011Daucus carotaCitrullus lanatus2513.6486.8476forward
CNT30200314Daucus carotaPisum sativum17.4322.9488.6853reverse complement
CNT30708521Daucus carotaGlycine max23.3623.3687.3271forward
CNT3046250Daucus carotaPrunus dulcis19.0821.489.6658reverse complement
CNT30587521Daucus carotaMusa acuminata26.6424.7788.8981forward
CNT3084261Daucus carotaVigna radiata23.3623.3688.7371forward
CNT30538764Daucus carotaBrassica napus25.9926.0787.3479forward
CNT30238127Daucus carotaBrassica oleracea25.9925.987.3479forward
CNT30552322Daucus carotaOryza glaberrima26.9726.2886.5982forward
CNT30172405Daucus carotaTrifolium pratense23.3631.2887.3271forward
CNT30146047Daucus carotaMedicago truncatula20.0720.290.1661forward
CNT30264180Daucus carotaBrassica rapa25.3325.587.0177forward
CNT3066721Daucus carotaLeersia perrieri26.6425.8886.4281forward
CNT30653438Daucus carotaRosa chinensis26.3225.9788.7580forward
CNT30478496Daucus carotaArabidopsis halleri18.4226.1791.0756forward
CNT30153271Daucus carotaPrunus persica21.7121.7887.8866forward
CNT3024649Daucus carotaPopulus trichocarpa23.3623.5190.1471forward
CNT3099765Daucus carotaOryza rufipogon23.0322.0188.5770forward
CNT30574593Daucus carotaOryza barthii26.9726.2886.5982forward
CNT30115823Daucus carotaOryza nivara26.9725.7987.882forward
CNT30174907Daucus carotaVigna angularis26.9726.8989.0282forward
CNT30725324Daucus carotaLupinus angustifolius23.3635.3285.9271forward
CNT3050501Daucus carotaCucumis sativus20.072091.861forward

Expression of CNT30623316

Peptides detected in this lncRNA

>peptide 1 (53 aa)
MELCLGHLAKARGSRSLKRKAQREAGFTEQRSLPSLVGGRITGLFLASPFNTR*

>peptide 2 (46 aa)
LSLVAWACNSSESFKMAGVWLGSEGWALLKFAQACPFQVWSCALAT*

Sequence

>CNT30623316
GCTGAGCCTGGTAGCGTGGGCTTGTAACTCGAGTGAGAGCTTTAAGATGGCTGGAGTTTGGCTTGGTTCAGAAGGCTGGGCTCTGTTGAAGTTTGCACAG
GCTTGCCCATTCCAAGTATGGAGTTGTGCCTTGGCCACCTAGCGAAGGCTCGGGGGTCAAGGTCACTAAAGCGGAAGGCACAGCGCGAGGCTGGTTTCAC
AGAGCAGCGATCACTTCCCTCTCTTGTCGGTGGAAGGATAACAGGCTTGTTCTTGGCAAGTCCATTTAACACCCGATGAGCCACTCAAATCAACAACCAT
CTTT