Detailed information on CNT30143579


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30316252Medicago truncatulaCorylus avellana29.725.4285.5690reverse complement
CNT30200314Medicago truncatulaPisum sativum71.9594.3781.65218reverse complement
CNT30158859Medicago truncatulaPistacia vera27.3928.9287.9583reverse complement
CNT30563209Medicago truncatulaActinidia chinensis22.1119.9488.0667reverse complement
CNT3084328Medicago truncatulaVigna radiata52.4852.386.79159forward
CNT30538764Medicago truncatulaBrassica napus23.123.19070forward
CNT30238127Medicago truncatulaBrassica oleracea23.122.959070forward
CNT30264180Medicago truncatulaBrassica rapa23.4323.5188.7371forward
CNT30612154Medicago truncatulaArabis alpina25.4125.3385.7177reverse complement
CNT30647270Medicago truncatulaRosa chinensis23.122.888.5770forward
CNT30175002Medicago truncatulaVigna angularis52.1552.8486.71158forward
CNT30724020Medicago truncatulaLupinus angustifolius41.9143.288.19127forward

Expression of CNT30143579

Peptides detected in this lncRNA

>peptide 1 (39 aa)
PSWVTSTCNSSGGMKVMEHGLGFARLGWWLHHAGLPTPS*

Sequence

>CNT30143579
GCCGAGCTGGGTAACTTCAACTTGTAACTCAAGTGGGGGCATGAAGGTGATGGAACATGGCTTAGGATTTGCCAGGTTGGGTTGGTGGCTGCACCATGCT
GGCCTGCCCACTCCAAGTTGAGAGTTGGCCAATGTGACCTAGGCGAAGGCTTGAGTCTCCTTGGTCCTAGACTGGAGGGCACTGTGTGAGGCTGGTTTCA
CAGAGCAGCAAACACCTCCGTCTCTTGACAGTGGAGGGATAACTGGCCGCTGCACTTCTAGTCCAATATGCCTGGTGAGCCTAGCCACCTGAACCACCAC
TTT