Detailed information on CNT30251780


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9LM15|RA213_ARATH, E-value = 7e-29

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696108Avena sativaOryza sativa29.3510.3891.36162forward
CNT30520678Avena sativaSetaria italica44.0241.2690.12243forward
CNT30512612Avena sativaJuglans regia20.295.5983.93112forward
CNT30188045Avena sativaSecale cereale62.1424.0492.13343forward
CNT30563605Avena sativaActinidia chinensis19.3822.6285.05107forward
CNT30554858Avena sativaOryza glaberrima63.2234.3586.82349forward
CNT30440289Avena sativaAegilops tauschii77.7284.9593.47429forward
CNT30453593Avena sativaSaccharum spontaneum36.7816.8592.12203forward
CNT30137714Avena sativaLolium perenne105.0731.6988.28580forward
CNT30228634Avena sativaAnanas comosus2514.4489.13138forward
CNT30364751Avena sativaSorghum bicolor26.2710.0789.66145forward
CNT30620999Avena sativaCajanus cajan25.369.2682.14140forward
CNT30371073Avena sativaOryza glumipatula61.5934.6682.65340forward
CNT30150787Avena sativaBrachypodium distachyon16.4924.8694.5191forward
CNT30103489Avena sativaOryza rufipogon66.8537.6984.28369forward
CNT30580750Avena sativaEchinochloa crusgalli38.5911.7290.61213forward
CNT30496207Avena sativaDigitaria exilis29.717.3794.51164forward
CNT30603672Avena sativaOryza punctata25.549.7290.78141forward

Expression of CNT30251780

Peptides detected in this lncRNA

>peptide 1 (98 aa)
RSESQSISYEGYLVRAKPAASSHGASLKSSCCISRTSAAAVVAGEGDDSADSREDDASSEDGEEQLLVGVDEVAAAVDAETEAVFLAFLEAVMFWQRV*

>peptide 2 (44 aa)
EKRVPVDLVRGVLGEGKASGLVPRRLAEVELLHLQNLCCGGGGG*

>peptide 3 (76 aa)
MERAAGGGLVVGEGCLLGGVEGAEPEAGTVAGEADLRHPLAPVALPHAAVELLRPRRGGRRHGSGLHGLGPRAEVAR

Sequence

>CNT30251780
CGAGAAGCGAGTCCCAGTCGATCTCGTACGAGGGGTACTTGGTGAGGGCAAAGCCAGCGGCCTCGTCCCACGGCGCCTCGCTGAAGTCGAGCTGCTGCAT
CTCCAGAACCTCTGCTGCGGCGGTGGTGGCGGGTGAGGGCGACGACTCGGCAGACTCCAGAGAGGACGACGCGTCATCGGAAGACGGCGAGGAGCAGTTG
CTGGTGGGGGTGGACGAGGTGGCAGCTGCGGTGGATGCGGAGACGGAGGCGGTCTTCTTGGCGTTCTTGGAGGCGGTGATGTTCTGGCAGAGGGTCTGAA
GCTTGGCGTCGACGGAGGCATGGAGCGGGCCGCGGGAGGCGGCCTGGTCGTAGGCGAGGGCTGCCTCCTCGGCGGTGTCGAAGGTGCCGAGCCAGAGGCG
GGTACGGTTGCGGGGGAGGCGGATCTCCGCCACCCACTTGCCCCAGTGGCGCTGCCGCACGCCGCGGTAGAGCTTCTGCGGCCGCGGCGGGGTGGCCGCC
GCCACGGAAGCGGGCTTCATGGGCTGGGCCCGCGGGCCGAGGTGGCCCGGCT