« Back to Oryza rufipogon search


Detailed information on CNT30103489


BLAST search results

BLAST vs Swiss-Prot:
sp|P85955|DRE1_PSEMZ, E-value = 1e-07

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30440289Oryza rufipogonAegilops tauschii29.5257.2383.74289forward
CNT30251780Oryza rufipogonAvena sativa37.6966.8584.28369forward

Expression of CNT30103489

Peptides detected in this lncRNA

>peptide 1 (70 aa)
MFWQSVWSLASTEAVRRLVVGKRRLLGCVEGAEPEPRAVPREADLRHPLPPVPLPHAAVQLLRPRRRRRRP

>peptide 2 (38 aa)
MLRRRRRRQRTSWRSWRRRCSGRASGAWRRRRRYAAWS*

Sequence

>CNT30103489
AAAAGATTGCACACACAACAATTTTAACAACGACGCTAAATAATAATAATAGTAGTAGTAGAGGTAATTCACATTACAAGTTCTTATAACACGCTAATAA
TATTACAAGACATAATAATAATAATGCTACTACTACTGTTTACAACCTGTAAGATCAGCAGTAGAAGGTAATAACAGACTTTAGAAGAGCAATGGACGCC
ACGGCCGGAGTAACTGACCAGTGACCGGCCACCGGAGACGCACGCCGGACACAAAAACGCCGGCTGCCGGTAGCATCGGCGTCTCCGGTTGAGGAAGAAC
ACCAACCAACCCTAGCATCTACAGAGGAAACAAGTCCGGAGAGAGATCGATCTACGTACACAAACGAACCAAACCAAAAGGATTAGGGACTATAAAACTG
CTAATCCATGCCCGTCCGTGCGGTGCAGAATGTCTAAAATCCCATCTGCACGGCGGCGGCGGCGGCGACGATTAGGCTAACGACGGCGTGAGTACTAGCC
AAGAAGTGGTGGTGGTGTTAATTGGCGGCGGCCTCGTCCCACGGCGCCTCGCTGAAGTCGAGCTGCTGCATCTCCGGCACGGTCGCCGGCGTCTCGGCCG
TGGTGGCGGCGGAGGACGGCGACAGGGAGGGCGACGAGTCGGCGGACTCCAGGCAGGACGACGCGTCGTCGGAGGACGGCGACGAGCAGTTGCTGGTGGG
CGCGGAGGATGTTGCGGCGGCGGAGGCGGAGACAGAGGACTTCTTGGCGTTCTTGGCGGCGGCGATGTTCTGGCAGAGCGTCTGGAGCTTGGCGTCGACG
GAGGCGGTACGCCGCCTGGTCGTAGGCAAGCGCCGCCTCCTCGGCTGTGTCGAAGGTGCCGAGCCAGAGCCGCGTGCGGTTCCGCGGGAGGCGGATCTCC
GCCACCCACTTCCCCCAGTGCCGCTGCCGCACGCCGCGGTACAGCTTCTGCGGCCGCGGCGGCGTCGCCGCCGCCCCCG