Detailed information on CNT30188045


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30520387Secale cerealeSetaria italica7.9224.8991.15113forward
CNT30224038Secale cerealeHordeum vulgare31.0496.7292.78443forward
CNT30554862Secale cerealeOryza glaberrima13.3120.8387.37190forward
CNT30440289Secale cerealeAegilops tauschii29.3682.9797.37419forward
CNT30251780Secale cerealeAvena sativa24.0462.1492.13343forward
CNT30137714Secale cerealeLolium perenne24.2518.9187.28346forward
CNT30150787Secale cerealeBrachypodium distachyon6.8726.7892.8698forward

Expression of CNT30188045

Peptides detected in this lncRNA

>peptide 1 (57 aa)
KNLQDKTNINNKIIFHITRFFDELILHDRLPLLQSAEQRKEQHLARTMDTDFTGRSH*

>peptide 2 (54 aa)
MERAAGGGVGEGEWRGGTRMGVEWRGRRGNSDKRPECAHQILPGQIYSCSHLRN*

>peptide 3 (52 aa)
MNWLLIGGEKRVPVDLIRWVLGEGEAGCLVPWRLAEVELLHLWNLCCGGGGR*

>peptide 4 (65 aa)
MFWQRVWSLASTEAWSGPREAAWGKENGEVGLGWEWSGGGGEATRIKGPSALTRSSPDRSIAAAI*

>peptide 5 (90 aa)
MNWKKSCLVSKPKPRTGRENQQQPQQKEMALVVDLDTTSKEVWKKNLAWPITTAKTEENRADLEPRDLKRPGDLAACWVNETNGGRRKRA*

Sequence

>CNT30188045
CAAGAATTTACAAGACAAAACAAACATTAACAACAAAATAATATTCCACATTACACGATTTTTTGATGAGCTAATTTTACATGACAGACTCCCACTGTTA
CAATCTGCAGAGCAGCGGAAGGAACAGCACCTAGCTAGAACCATGGACACAGACTTCACCGGCCGGAGTCACTGACCAGTGACCGACCACCGGAGACGCC
GGGCACAAAAACGCCGGCTTATAGTCATCCGGGACGGACTAACCAAACCCTACCAACAAGAGAACAAATAATAGATCTACACAATGAACAAGGATTAGAG
ACTTAGAGCTAATCCGCTAAAAGCCCGTGCAGAATGTCTAAAATGCCATCTGCATCGCGGCGACCCATTAACCTAGCATCATGACACGCTAAAGACGGTA
GTAGTTGTAGCTGACGAACATGAACTGGTTGCTAATTGGTGGCGAGAAGCGAGTCCCAGTCGATCTCATACGATGGGTACTTGGTGAGGGCGAAGCAGGC
TGCCTCGTCCCATGGCGCCTCGCTGAAGTCGAGCTGCTGCATCTCTGGAACCTCTGCTGCGGTGGTGGTGGCAGGTGACGGTGACGACTCCGCTGACTCC
AGCGAGGACGACGCCTCGTCGGAGGACGGCGAGGAGCAGTTGCTGGTGGGGGTGGACGACGTGGCTGCGGCGGTGGACGCGGAGACGGAGGCGGACTTCT
TGGCGTTCTTGGAGGCGGTGATGTTCTGGCAGAGGGTCTGGAGCTTGGCGTCAACAGAGGCATGGAGCGGGCCGCGGGAGGCGGCGTGGGGGAAGGAGAA
TGGCGAGGTGGGACTAGGATGGGAGTGGAGTGGAGGGGGAGGAGAGGCAACTCGGATAAAAGGCCCGAGTGCGCTCACCAGATCCTCCCCGGACAGATCT
ATAGCTGCAGCCATCTAAGGAACTAGGACGAACTTTTTTTTTTTTGATTTTTGTTTTCTTGGAAAGATGAACTGGAAAAAAAGCTGCCTGGTTTCCAAAC
CAAAACCTAGAACAGGCAGAGAAAATCAACAACAGCCACAGCAAAAAGAGATGGCGTTGGTGGTAGATCTAGACACAACGAGCAAGGAGGTGTGGAAAAA
GAACCTCGCCTGGCCGATTACTACAGCTAAAACAGAAGAAAATAGAGCAGATCTGGAGCCCCGGGATCTAAAACGTCCTGGAGACCTCGCTGCCTGCTGG
GTGAACGAGACGAACGGTGGAAGGAGGAAGAGGGCTTGAGACTCGGAGAACCTTACCTTGGCGACGCAAGAACTCGCTCGGATCTATGCTTACCTCGCTC
GAACTCACGTGAGTGTTTGTGGTTGCTGGGATTGGGGCTTTTTCGGTGGTGGCTGGTGGCTGTGGAATGTGTGTGTGGATGAAGGTCGAAGTGGGCGAAA
TGGAGGCGGGGAGGAGGACTGGAGGGC